Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LRRC40Q9H9A6 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
LRRC40Q9H9A6 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LRRC40Q9H9A6 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
LRRC40Q9H9A6 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LRRC40Q9H9A6 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
LRRC40Q9H9A6 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LRRC40Q9H9A6 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC15.33■□□□□ 0.04
LRRC40Q9H9A6 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC15.33■□□□□ 0.04
LRRC40Q9H9A6 AC067750.1-201ENST00000608826 6545 ntBASIC15.33■□□□□ 0.04
LRRC40Q9H9A6 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LRRC40Q9H9A6 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
LRRC40Q9H9A6 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LRRC40Q9H9A6 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 USP28-214ENST00000545540 3431 ntTSL 2 BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 AC002472.2-201ENST00000442739 958 ntBASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 AC005252.2-201ENST00000624630 1141 ntBASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC15.32■□□□□ 0.04
LRRC40Q9H9A6 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 BX640514.1-201ENST00000583223 1918 ntBASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 AC236430.1-201ENST00000402231 743 ntBASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 PIN1P1-201ENST00000412108 996 ntBASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 AL162726.2-201ENST00000438986 1017 ntBASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 GIMAP3P-201ENST00000495150 836 ntBASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 AC140912.1-201ENST00000577171 1054 ntBASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 AC008494.3-201ENST00000606615 944 ntBASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 METTL26-214ENST00000614890 801 ntTSL 3 BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
LRRC40Q9H9A6 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms