Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 AL928921.2-201ENST00000641325 2442 ntBASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 HNRNPA3P1-201ENST00000401429 1139 ntBASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 RHOA-206ENST00000454011 889 ntTSL 2 BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 HNRNPA3P5-201ENST00000455201 833 ntBASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 AL391069.4-201ENST00000609583 481 ntBASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 AL158212.4-201ENST00000624062 1286 ntBASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
POLR2J3Q9H1A7 AC100757.3-201ENST00000622361 1406 ntBASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 AC093525.8-201ENST00000624099 1342 ntBASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 VMA21-202ENST00000370361 693 ntTSL 5 BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 AC092580.3-201ENST00000430932 139 ntBASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 FAM86GP-201ENST00000448322 971 ntBASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 AC097493.3-201ENST00000509725 367 ntBASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 CALM1-205ENST00000553542 877 ntTSL 5 BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 AL590560.3-201ENST00000623350 461 ntBASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
POLR2J3Q9H1A7 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms