Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM43Q96BQ3 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
TRIM43Q96BQ3 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC16.07■□□□□ 0.16
TRIM43Q96BQ3 AD000864.1-201ENST00000624076 2295 ntBASIC16.07■□□□□ 0.16
TRIM43Q96BQ3 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.07■□□□□ 0.16
TRIM43Q96BQ3 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.07■□□□□ 0.16
TRIM43Q96BQ3 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.07■□□□□ 0.16
TRIM43Q96BQ3 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.07■□□□□ 0.16
TRIM43Q96BQ3 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.07■□□□□ 0.16
TRIM43Q96BQ3 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM43Q96BQ3 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
TRIM43Q96BQ3 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 LINC02199-201ENST00000506655 2702 ntBASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 AHCYP4-201ENST00000419201 1315 ntBASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 AC131206.1-201ENST00000538078 1211 ntBASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 HERC2P11-201ENST00000562845 725 ntBASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 AC100756.2-201ENST00000569537 736 ntBASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 AC007952.4-201ENST00000573866 637 ntBASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 AL022334.2-201ENST00000610000 484 ntBASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 AC018695.6-201ENST00000614011 534 ntBASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 AC010491.1-201ENST00000563101 2797 ntBASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 AC023090.2-201ENST00000625182 2110 ntBASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM43Q96BQ3 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 KRT17P5-201ENST00000332088 839 ntBASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 AC012073.1-201ENST00000606114 1108 ntBASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 AP000322.3-201ENST00000608665 388 ntBASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 AC011471.3-201ENST00000623576 402 ntBASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 PCDHB19P-201ENST00000570871 2371 ntBASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
TRIM43Q96BQ3 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC16.04■□□□□ 0.16
TRIM43Q96BQ3 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM43Q96BQ3 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM43Q96BQ3 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC16.04■□□□□ 0.16
TRIM43Q96BQ3 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
TRIM43Q96BQ3 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM43Q96BQ3 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM43Q96BQ3 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM43Q96BQ3 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
TRIM43Q96BQ3 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC16.04■□□□□ 0.16
TRIM43Q96BQ3 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM43Q96BQ3 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM43Q96BQ3 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms