Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 NUS1P3-201ENST00000423502 862 ntBASIC18.21■□□□□ 0.51
VPS53Q5VIR6 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 AC114812.1-204ENST00000449669 728 ntBASIC18.21■□□□□ 0.51
VPS53Q5VIR6 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 AC015936.2-201ENST00000593177 259 ntBASIC18.21■□□□□ 0.51
VPS53Q5VIR6 BTNL10-201ENST00000595971 695 ntBASIC18.21■□□□□ 0.51
VPS53Q5VIR6 AC145423.3-201ENST00000615987 467 ntBASIC18.21■□□□□ 0.51
VPS53Q5VIR6 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS53Q5VIR6 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.5
VPS53Q5VIR6 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
VPS53Q5VIR6 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC18.21■□□□□ 0.5
VPS53Q5VIR6 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 AL138709.1-201ENST00000614840 1693 ntBASIC18.2■□□□□ 0.5
VPS53Q5VIR6 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 AC079776.1-201ENST00000401540 1152 ntBASIC18.2■□□□□ 0.5
VPS53Q5VIR6 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 AC233724.13-201ENST00000598383 410 ntBASIC18.2■□□□□ 0.5
VPS53Q5VIR6 AC004466.1-201ENST00000599515 1080 ntBASIC18.2■□□□□ 0.5
VPS53Q5VIR6 AC023908.3-201ENST00000564211 3047 ntBASIC18.2■□□□□ 0.5
VPS53Q5VIR6 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 AC063926.2-201ENST00000623766 1308 ntBASIC18.2■□□□□ 0.5
VPS53Q5VIR6 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC18.2■□□□□ 0.5
VPS53Q5VIR6 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 DUX4L47-201ENST00000566374 394 ntBASIC18.19■□□□□ 0.5
VPS53Q5VIR6 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 AC244669.2-201ENST00000612320 853 ntBASIC18.19■□□□□ 0.5
VPS53Q5VIR6 WNT11-204ENST00000621122 789 ntTSL 5 BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS53Q5VIR6 AL136379.1-201ENST00000623471 2642 ntBASIC18.19■□□□□ 0.5
VPS53Q5VIR6 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
VPS53Q5VIR6 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms