Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 HLA-H-201ENST00000383620 1096 ntBASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 GOLGA2P4-201ENST00000441462 777 ntBASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 BNIP3P42-201ENST00000454982 569 ntBASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 RNA5SP410-201ENST00000516285 106 ntBASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 BNIP3P29-201ENST00000598302 571 ntBASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 AC011447.5-201ENST00000616168 564 ntBASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 MIR6775-201ENST00000617557 69 ntBASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 AC139749.1-202ENST00000617529 3139 ntBASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
PDLIM3Q53GG5 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 TNN-203ENST00000622870 3719 ntTSL 5 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 CD81-202ENST00000381036 880 ntTSL 3 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 HIST1H2BPS3-201ENST00000419683 341 ntBASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 AC009477.1-201ENST00000452936 217 ntBASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 AL138828.2-201ENST00000615812 383 ntBASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC12.61□□□□□ -0.39
PDLIM3Q53GG5 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms