Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 HLA-DMA-203ENST00000395305 777 ntBASIC18■□□□□ 0.47
CCDC88AQ3V6T2 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 SKA2-202ENST00000437036 625 ntTSL 2 BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 AC012158.2-201ENST00000536546 354 ntBASIC18■□□□□ 0.47
CCDC88AQ3V6T2 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC88AQ3V6T2 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 RPS15-202ENST00000585665 467 ntTSL 3 BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 AP001527.2-201ENST00000614441 631 ntBASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 MARK2P16-201ENST00000605714 1723 ntBASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 AL162727.3-201ENST00000635661 2787 ntBASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 TSPY25P-201ENST00000429463 745 ntBASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 VPS18-202ENST00000558474 873 ntTSL 3 BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CCDC88AQ3V6T2 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 AC013268.4-201ENST00000637413 2228 ntBASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 USP4-203ENST00000415188 1454 ntTSL 3 BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 DBP-202ENST00000593500 712 ntTSL 2 BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC88AQ3V6T2 AC002044.2-201ENST00000624910 970 ntBASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms