Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
NEK3P51956 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
NEK3P51956 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NEK3P51956 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC15.58■□□□□ 0.08
NEK3P51956 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
NEK3P51956 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC15.58■□□□□ 0.08
NEK3P51956 GAPDHP40-201ENST00000505218 1006 ntBASIC15.58■□□□□ 0.08
NEK3P51956 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
NEK3P51956 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
NEK3P51956 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC15.58■□□□□ 0.08
NEK3P51956 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.58■□□□□ 0.08
NEK3P51956 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC15.58■□□□□ 0.08
NEK3P51956 AL022328.1-201ENST00000610050 478 ntBASIC15.58■□□□□ 0.08
NEK3P51956 MIR6805-201ENST00000615055 62 ntBASIC15.58■□□□□ 0.08
NEK3P51956 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC15.58■□□□□ 0.08
NEK3P51956 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
NEK3P51956 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC15.58■□□□□ 0.08
NEK3P51956 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
NEK3P51956 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC15.58■□□□□ 0.08
NEK3P51956 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NEK3P51956 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
NEK3P51956 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC15.58■□□□□ 0.08
NEK3P51956 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NEK3P51956 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC15.58■□□□□ 0.08
NEK3P51956 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC15.58■□□□□ 0.08
NEK3P51956 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
NEK3P51956 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
NEK3P51956 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
NEK3P51956 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NEK3P51956 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NEK3P51956 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NEK3P51956 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.58■□□□□ 0.08
NEK3P51956 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC15.58■□□□□ 0.08
NEK3P51956 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC15.58■□□□□ 0.08
NEK3P51956 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
NEK3P51956 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
NEK3P51956 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
NEK3P51956 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC15.57■□□□□ 0.08
NEK3P51956 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
NEK3P51956 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
NEK3P51956 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
NEK3P51956 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC15.57■□□□□ 0.08
NEK3P51956 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 AL355864.2-201ENST00000447420 863 ntBASIC15.57■□□□□ 0.08
NEK3P51956 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC15.57■□□□□ 0.08
NEK3P51956 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
NEK3P51956 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
NEK3P51956 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC15.57■□□□□ 0.08
NEK3P51956 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC15.57■□□□□ 0.08
NEK3P51956 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.57■□□□□ 0.08
NEK3P51956 IFT20-208ENST00000578985 831 ntTSL 3 BASIC15.57■□□□□ 0.08
NEK3P51956 AC025181.2-201ENST00000606994 802 ntBASIC15.57■□□□□ 0.08
NEK3P51956 PFAS-212ENST00000625942 396 ntTSL 5 BASIC15.57■□□□□ 0.08
NEK3P51956 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC15.57■□□□□ 0.08
NEK3P51956 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.57■□□□□ 0.08
NEK3P51956 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
NEK3P51956 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 AGER-206ENST00000375070 1463 ntTSL 5 BASIC15.57■□□□□ 0.08
NEK3P51956 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.57■□□□□ 0.08
NEK3P51956 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.57■□□□□ 0.08
NEK3P51956 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
NEK3P51956 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NEK3P51956 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC15.56■□□□□ 0.08
NEK3P51956 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
NEK3P51956 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NEK3P51956 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NEK3P51956 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC15.56■□□□□ 0.08
NEK3P51956 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NEK3P51956 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
NEK3P51956 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
NEK3P51956 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NEK3P51956 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NEK3P51956 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms