Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
MRE11P49959 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.69■□□□□ 0.42
MRE11P49959 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
MRE11P49959 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
MRE11P49959 AMT-224ENST00000635808 1610 ntTSL 5 BASIC17.69■□□□□ 0.42
MRE11P49959 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
MRE11P49959 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
MRE11P49959 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
MRE11P49959 ADAMTS7P1-201ENST00000613213 4793 ntBASIC17.68■□□□□ 0.42
MRE11P49959 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MRE11P49959 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
MRE11P49959 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MRE11P49959 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MRE11P49959 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MRE11P49959 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC17.68■□□□□ 0.42
MRE11P49959 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC17.68■□□□□ 0.42
MRE11P49959 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MRE11P49959 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MRE11P49959 NME6-203ENST00000415644 849 ntTSL 2 BASIC17.68■□□□□ 0.42
MRE11P49959 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC17.68■□□□□ 0.42
MRE11P49959 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
MRE11P49959 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.68■□□□□ 0.42
MRE11P49959 AL512638.1-201ENST00000457493 794 ntBASIC17.68■□□□□ 0.42
MRE11P49959 TPT1P11-201ENST00000458482 498 ntBASIC17.68■□□□□ 0.42
MRE11P49959 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.68■□□□□ 0.42
MRE11P49959 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC17.68■□□□□ 0.42
MRE11P49959 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.68■□□□□ 0.42
MRE11P49959 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
MRE11P49959 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC17.68■□□□□ 0.42
MRE11P49959 AL031055.1-201ENST00000606362 631 ntBASIC17.68■□□□□ 0.42
MRE11P49959 CU639417.3-201ENST00000624240 1404 ntBASIC17.68■□□□□ 0.42
MRE11P49959 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
MRE11P49959 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC17.68■□□□□ 0.42
MRE11P49959 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
MRE11P49959 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MRE11P49959 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MRE11P49959 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC17.68■□□□□ 0.42
MRE11P49959 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MRE11P49959 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
MRE11P49959 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
MRE11P49959 AC138969.3-201ENST00000546612 1459 ntBASIC17.68■□□□□ 0.42
MRE11P49959 AC138932.2-201ENST00000548268 1459 ntBASIC17.68■□□□□ 0.42
MRE11P49959 AC126755.4-201ENST00000549796 1459 ntBASIC17.68■□□□□ 0.42
MRE11P49959 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
MRE11P49959 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC17.68■□□□□ 0.42
MRE11P49959 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MRE11P49959 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
MRE11P49959 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MRE11P49959 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
MRE11P49959 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MRE11P49959 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC17.67■□□□□ 0.42
MRE11P49959 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
MRE11P49959 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC17.67■□□□□ 0.42
MRE11P49959 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MRE11P49959 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC17.67■□□□□ 0.42
MRE11P49959 AL691432.1-201ENST00000596308 1422 ntBASIC17.67■□□□□ 0.42
MRE11P49959 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC17.67■□□□□ 0.42
MRE11P49959 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MRE11P49959 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MRE11P49959 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MRE11P49959 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC17.67■□□□□ 0.42
MRE11P49959 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.67■□□□□ 0.42
MRE11P49959 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MRE11P49959 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.67■□□□□ 0.42
MRE11P49959 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
MRE11P49959 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MRE11P49959 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC17.67■□□□□ 0.42
MRE11P49959 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MRE11P49959 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.67■□□□□ 0.42
MRE11P49959 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
MRE11P49959 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MRE11P49959 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
MRE11P49959 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
MRE11P49959 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC17.67■□□□□ 0.42
MRE11P49959 SF1-209ENST00000433274 2317 ntTSL 2 BASIC17.67■□□□□ 0.42
MRE11P49959 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC17.67■□□□□ 0.42
MRE11P49959 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
MRE11P49959 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MRE11P49959 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MRE11P49959 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
MRE11P49959 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MRE11P49959 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
MRE11P49959 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
MRE11P49959 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
MRE11P49959 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC17.66■□□□□ 0.42
MRE11P49959 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
MRE11P49959 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
MRE11P49959 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MRE11P49959 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MRE11P49959 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
MRE11P49959 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MRE11P49959 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC17.66■□□□□ 0.42
MRE11P49959 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MRE11P49959 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
MRE11P49959 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC17.66■□□□□ 0.42
MRE11P49959 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
MRE11P49959 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
MRE11P49959 AC118758.2-201ENST00000614242 2813 ntBASIC17.66■□□□□ 0.42
MRE11P49959 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
MRE11P49959 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms