Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RNA5-8SN4-201ENST00000613359 153 ntBASIC15.97■□□□□ 0.15
LIG3P49916 RNA5-8SN5-201ENST00000619471 153 ntBASIC15.97■□□□□ 0.15
LIG3P49916 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIG3P49916 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.97■□□□□ 0.15
LIG3P49916 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIG3P49916 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIG3P49916 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC15.97■□□□□ 0.15
LIG3P49916 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.97■□□□□ 0.15
LIG3P49916 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LIG3P49916 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC15.97■□□□□ 0.15
LIG3P49916 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC15.97■□□□□ 0.15
LIG3P49916 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC15.97■□□□□ 0.15
LIG3P49916 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIG3P49916 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
LIG3P49916 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIG3P49916 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
LIG3P49916 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIG3P49916 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIG3P49916 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIG3P49916 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
LIG3P49916 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LIG3P49916 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LIG3P49916 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC15.96■□□□□ 0.15
LIG3P49916 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIG3P49916 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIG3P49916 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
LIG3P49916 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.96■□□□□ 0.15
LIG3P49916 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
LIG3P49916 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
LIG3P49916 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
LIG3P49916 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
LIG3P49916 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC15.96■□□□□ 0.15
LIG3P49916 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
LIG3P49916 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIG3P49916 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC15.96■□□□□ 0.15
LIG3P49916 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
LIG3P49916 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC15.96■□□□□ 0.15
LIG3P49916 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
LIG3P49916 INVS-201ENST00000262456 2968 ntTSL 5 BASIC15.96■□□□□ 0.15
LIG3P49916 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIG3P49916 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
LIG3P49916 RAD18-204ENST00000418463 563 ntTSL 4 BASIC15.96■□□□□ 0.15
LIG3P49916 RAD18-205ENST00000421052 582 ntTSL 3 BASIC15.96■□□□□ 0.15
LIG3P49916 AC114501.2-201ENST00000439631 535 ntBASIC15.96■□□□□ 0.15
LIG3P49916 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15.96■□□□□ 0.15
LIG3P49916 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.96■□□□□ 0.15
LIG3P49916 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
LIG3P49916 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC15.96■□□□□ 0.15
LIG3P49916 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIG3P49916 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC15.96■□□□□ 0.15
LIG3P49916 AC025048.3-201ENST00000590609 569 ntBASIC15.96■□□□□ 0.15
LIG3P49916 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
LIG3P49916 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIG3P49916 AC005702.4-201ENST00000618393 416 ntBASIC15.96■□□□□ 0.15
LIG3P49916 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIG3P49916 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIG3P49916 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIG3P49916 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIG3P49916 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC15.96■□□□□ 0.15
LIG3P49916 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.96■□□□□ 0.15
LIG3P49916 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
LIG3P49916 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LIG3P49916 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
LIG3P49916 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
LIG3P49916 TKT-201ENST00000296289 1931 ntTSL 5 BASIC15.96■□□□□ 0.14
LIG3P49916 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.96■□□□□ 0.14
LIG3P49916 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
LIG3P49916 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.96■□□□□ 0.14
LIG3P49916 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
LIG3P49916 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
LIG3P49916 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.14
LIG3P49916 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
LIG3P49916 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIG3P49916 PPT1-213ENST00000641319 2388 ntBASIC15.95■□□□□ 0.14
LIG3P49916 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC15.95■□□□□ 0.14
LIG3P49916 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
LIG3P49916 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC15.95■□□□□ 0.14
LIG3P49916 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
LIG3P49916 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.95■□□□□ 0.14
LIG3P49916 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC15.95■□□□□ 0.14
LIG3P49916 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIG3P49916 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC15.95■□□□□ 0.14
LIG3P49916 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIG3P49916 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIG3P49916 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.95■□□□□ 0.14
LIG3P49916 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
LIG3P49916 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC15.95■□□□□ 0.14
LIG3P49916 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC15.95■□□□□ 0.14
LIG3P49916 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC15.95■□□□□ 0.14
LIG3P49916 RASL12-203ENST00000434605 982 ntTSL 2 BASIC15.95■□□□□ 0.14
LIG3P49916 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC15.95■□□□□ 0.14
LIG3P49916 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC15.95■□□□□ 0.14
LIG3P49916 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC15.95■□□□□ 0.14
LIG3P49916 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC15.95■□□□□ 0.14
LIG3P49916 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIG3P49916 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIG3P49916 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC15.95■□□□□ 0.14
LIG3P49916 AC104794.3-201ENST00000566840 1248 ntBASIC15.95■□□□□ 0.14
LIG3P49916 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
LIG3P49916 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms