Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC13.31□□□□□ -0.28
CX3CR1P49238 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CX3CR1P49238 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC13.31□□□□□ -0.28
CX3CR1P49238 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC13.31□□□□□ -0.28
CX3CR1P49238 AC018442.1-201ENST00000421439 2061 ntBASIC13.31□□□□□ -0.28
CX3CR1P49238 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CX3CR1P49238 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CX3CR1P49238 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CX3CR1P49238 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CX3CR1P49238 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
CX3CR1P49238 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
CX3CR1P49238 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CX3CR1P49238 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC13.31□□□□□ -0.28
CX3CR1P49238 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC13.31□□□□□ -0.28
CX3CR1P49238 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC13.31□□□□□ -0.28
CX3CR1P49238 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CR1P49238 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
CX3CR1P49238 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC13.3□□□□□ -0.28
CX3CR1P49238 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CR1P49238 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
CX3CR1P49238 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CR1P49238 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CR1P49238 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CR1P49238 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CR1P49238 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CR1P49238 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
CX3CR1P49238 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC13.3□□□□□ -0.28
CX3CR1P49238 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CR1P49238 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
CX3CR1P49238 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC13.3□□□□□ -0.28
CX3CR1P49238 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CR1P49238 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CR1P49238 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
CX3CR1P49238 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CR1P49238 SPDYE19P-201ENST00000338590 713 ntBASIC13.3□□□□□ -0.28
CX3CR1P49238 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
CX3CR1P49238 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CR1P49238 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC13.3□□□□□ -0.28
CX3CR1P49238 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CR1P49238 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC13.3□□□□□ -0.28
CX3CR1P49238 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC13.3□□□□□ -0.28
CX3CR1P49238 RHOA-206ENST00000454011 889 ntTSL 2 BASIC13.3□□□□□ -0.28
CX3CR1P49238 VDAC1P7-201ENST00000462417 847 ntBASIC13.3□□□□□ -0.28
CX3CR1P49238 RN7SL399P-201ENST00000471648 279 ntBASIC13.3□□□□□ -0.28
CX3CR1P49238 RPL13AP25-201ENST00000484130 612 ntBASIC13.3□□□□□ -0.28
CX3CR1P49238 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC13.3□□□□□ -0.28
CX3CR1P49238 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC13.3□□□□□ -0.28
CX3CR1P49238 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
CX3CR1P49238 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC13.3□□□□□ -0.28
CX3CR1P49238 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC13.3□□□□□ -0.28
CX3CR1P49238 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CR1P49238 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC13.3□□□□□ -0.28
CX3CR1P49238 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
CX3CR1P49238 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CR1P49238 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC13.3□□□□□ -0.28
CX3CR1P49238 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CR1P49238 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CR1P49238 AC093525.8-201ENST00000624099 1342 ntBASIC13.3□□□□□ -0.28
CX3CR1P49238 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC13.3□□□□□ -0.28
CX3CR1P49238 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CR1P49238 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CR1P49238 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
CX3CR1P49238 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CX3CR1P49238 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
CX3CR1P49238 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC13.3□□□□□ -0.28
CX3CR1P49238 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CR1P49238 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
CX3CR1P49238 RDX-218ENST00000544551 4117 ntTSL 2 BASIC13.29□□□□□ -0.28
CX3CR1P49238 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CR1P49238 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CR1P49238 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
CX3CR1P49238 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CR1P49238 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC13.29□□□□□ -0.28
CX3CR1P49238 AL158070.2-201ENST00000623713 1621 ntBASIC13.29□□□□□ -0.28
CX3CR1P49238 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CR1P49238 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CR1P49238 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CR1P49238 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CR1P49238 AL138799.1-201ENST00000448213 1675 ntBASIC13.29□□□□□ -0.28
CX3CR1P49238 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CR1P49238 AC087386.2-201ENST00000623212 4637 ntBASIC13.29□□□□□ -0.28
CX3CR1P49238 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
CX3CR1P49238 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CR1P49238 MRPS18AP1-201ENST00000414458 589 ntBASIC13.29□□□□□ -0.28
CX3CR1P49238 AL353779.1-201ENST00000434793 351 ntBASIC13.29□□□□□ -0.28
CX3CR1P49238 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
CX3CR1P49238 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CR1P49238 AC026410.3-201ENST00000514280 936 ntBASIC13.29□□□□□ -0.28
CX3CR1P49238 REEP4-207ENST00000523293 913 ntTSL 3 BASIC13.29□□□□□ -0.28
CX3CR1P49238 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC13.29□□□□□ -0.28
CX3CR1P49238 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC13.29□□□□□ -0.28
CX3CR1P49238 AC005498.2-205ENST00000593218 784 ntBASIC13.29□□□□□ -0.28
CX3CR1P49238 AC006538.3-201ENST00000612495 578 ntBASIC13.29□□□□□ -0.28
CX3CR1P49238 ORC5-208ENST00000626700 344 ntTSL 3 BASIC13.29□□□□□ -0.28
CX3CR1P49238 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC13.29□□□□□ -0.28
CX3CR1P49238 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CR1P49238 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CR1P49238 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CX3CR1P49238 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
CX3CR1P49238 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms