Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A2P12110 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A2P12110 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A2P12110 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
COL6A2P12110 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A2P12110 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A2P12110 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC14.92□□□□□ -0.02
COL6A2P12110 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A2P12110 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC14.92□□□□□ -0.02
COL6A2P12110 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A2P12110 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A2P12110 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
COL6A2P12110 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC14.92□□□□□ -0.02
COL6A2P12110 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A2P12110 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
COL6A2P12110 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
COL6A2P12110 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A2P12110 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A2P12110 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A2P12110 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A2P12110 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A2P12110 VMA21-202ENST00000370361 693 ntTSL 5 BASIC14.92□□□□□ -0.02
COL6A2P12110 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.92□□□□□ -0.02
COL6A2P12110 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.92□□□□□ -0.02
COL6A2P12110 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
COL6A2P12110 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
COL6A2P12110 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A2P12110 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC14.92□□□□□ -0.02
COL6A2P12110 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.92□□□□□ -0.02
COL6A2P12110 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.92□□□□□ -0.02
COL6A2P12110 AL049840.4-201ENST00000602422 811 ntBASIC14.92□□□□□ -0.02
COL6A2P12110 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
COL6A2P12110 AL603764.1-201ENST00000636452 321 ntBASIC14.92□□□□□ -0.02
COL6A2P12110 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A2P12110 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A2P12110 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A2P12110 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC14.92□□□□□ -0.02
COL6A2P12110 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
COL6A2P12110 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A2P12110 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A2P12110 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A2P12110 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
COL6A2P12110 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A2P12110 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A2P12110 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC14.92□□□□□ -0.02
COL6A2P12110 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A2P12110 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.92□□□□□ -0.02
COL6A2P12110 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A2P12110 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
COL6A2P12110 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.92□□□□□ -0.02
COL6A2P12110 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL6A2P12110 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A2P12110 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A2P12110 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A2P12110 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A2P12110 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A2P12110 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC14.91□□□□□ -0.02
COL6A2P12110 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A2P12110 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.91□□□□□ -0.02
COL6A2P12110 GOLGA8VP-201ENST00000559009 1798 ntBASIC14.91□□□□□ -0.02
COL6A2P12110 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A2P12110 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A2P12110 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A2P12110 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
COL6A2P12110 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC14.91□□□□□ -0.02
COL6A2P12110 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A2P12110 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC14.91□□□□□ -0.02
COL6A2P12110 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
COL6A2P12110 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
COL6A2P12110 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.91□□□□□ -0.02
COL6A2P12110 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.91□□□□□ -0.02
COL6A2P12110 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.91□□□□□ -0.02
COL6A2P12110 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A2P12110 MIR943-201ENST00000401286 94 ntBASIC14.91□□□□□ -0.02
COL6A2P12110 MIR1233-2-201ENST00000408138 82 ntBASIC14.91□□□□□ -0.02
COL6A2P12110 MIR1233-1-201ENST00000408722 82 ntBASIC14.91□□□□□ -0.02
COL6A2P12110 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC14.91□□□□□ -0.02
COL6A2P12110 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.91□□□□□ -0.02
COL6A2P12110 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.91□□□□□ -0.02
COL6A2P12110 AL589987.1-201ENST00000453380 819 ntBASIC14.91□□□□□ -0.02
COL6A2P12110 RN7SL399P-201ENST00000471648 279 ntBASIC14.91□□□□□ -0.02
COL6A2P12110 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.91□□□□□ -0.02
COL6A2P12110 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A2P12110 AC135586.1-201ENST00000539323 574 ntBASIC14.91□□□□□ -0.02
COL6A2P12110 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC14.91□□□□□ -0.02
COL6A2P12110 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.91□□□□□ -0.02
COL6A2P12110 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
COL6A2P12110 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.91□□□□□ -0.02
COL6A2P12110 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC14.91□□□□□ -0.02
COL6A2P12110 AL662799.1-202ENST00000614205 422 ntBASIC14.91□□□□□ -0.02
COL6A2P12110 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.91□□□□□ -0.02
COL6A2P12110 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A2P12110 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A2P12110 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A2P12110 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A2P12110 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL6A2P12110 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
COL6A2P12110 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.91□□□□□ -0.02
COL6A2P12110 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC14.91□□□□□ -0.02
COL6A2P12110 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms