Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
RNF40O75150 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RNF40O75150 ST20-AS1-201ENST00000560255 4223 ntBASIC16.4■□□□□ 0.22
RNF40O75150 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RNF40O75150 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RNF40O75150 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
RNF40O75150 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
RNF40O75150 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC16.4■□□□□ 0.22
RNF40O75150 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC16.4■□□□□ 0.22
RNF40O75150 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.39■□□□□ 0.22
RNF40O75150 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
RNF40O75150 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNF40O75150 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.39■□□□□ 0.21
RNF40O75150 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNF40O75150 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RNF40O75150 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
RNF40O75150 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNF40O75150 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
RNF40O75150 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNF40O75150 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
RNF40O75150 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.39■□□□□ 0.21
RNF40O75150 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
RNF40O75150 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNF40O75150 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC16.39■□□□□ 0.21
RNF40O75150 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RNF40O75150 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC16.39■□□□□ 0.21
RNF40O75150 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.39■□□□□ 0.21
RNF40O75150 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC16.39■□□□□ 0.21
RNF40O75150 AC092337.1-201ENST00000568699 1129 ntBASIC16.39■□□□□ 0.21
RNF40O75150 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNF40O75150 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC16.39■□□□□ 0.21
RNF40O75150 AC074044.1-201ENST00000609673 707 ntBASIC16.39■□□□□ 0.21
RNF40O75150 WFDC1-204ENST00000613603 549 ntBASIC16.39■□□□□ 0.21
RNF40O75150 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC16.39■□□□□ 0.21
RNF40O75150 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
RNF40O75150 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNF40O75150 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.39■□□□□ 0.21
RNF40O75150 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNF40O75150 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RNF40O75150 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
RNF40O75150 TNN-203ENST00000622870 3719 ntTSL 5 BASIC16.39■□□□□ 0.21
RNF40O75150 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF40O75150 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF40O75150 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RNF40O75150 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC16.38■□□□□ 0.21
RNF40O75150 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
RNF40O75150 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF40O75150 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF40O75150 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.38■□□□□ 0.21
RNF40O75150 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC16.38■□□□□ 0.21
RNF40O75150 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RNF40O75150 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC16.38■□□□□ 0.21
RNF40O75150 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RNF40O75150 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.38■□□□□ 0.21
RNF40O75150 STK33-217ENST00000534493 1895 ntTSL 2 BASIC16.38■□□□□ 0.21
RNF40O75150 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF40O75150 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF40O75150 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF40O75150 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
RNF40O75150 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF40O75150 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
RNF40O75150 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC16.38■□□□□ 0.21
RNF40O75150 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
RNF40O75150 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC16.38■□□□□ 0.21
RNF40O75150 TIMM17BP1-201ENST00000545713 516 ntBASIC16.38■□□□□ 0.21
RNF40O75150 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC16.38■□□□□ 0.21
RNF40O75150 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
RNF40O75150 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC16.38■□□□□ 0.21
RNF40O75150 MIR3908-201ENST00000579798 126 ntBASIC16.38■□□□□ 0.21
RNF40O75150 AC025048.3-201ENST00000590609 569 ntBASIC16.38■□□□□ 0.21
RNF40O75150 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RNF40O75150 AL512343.1-201ENST00000605837 169 ntBASIC16.38■□□□□ 0.21
RNF40O75150 AC005702.4-201ENST00000618393 416 ntBASIC16.38■□□□□ 0.21
RNF40O75150 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC16.38■□□□□ 0.21
RNF40O75150 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF40O75150 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
RNF40O75150 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC16.38■□□□□ 0.21
RNF40O75150 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RNF40O75150 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC16.38■□□□□ 0.21
RNF40O75150 CICP17-201ENST00000418553 2377 ntBASIC16.38■□□□□ 0.21
RNF40O75150 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF40O75150 INTS4P1-203ENST00000641008 3683 ntBASIC16.38■□□□□ 0.21
RNF40O75150 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF40O75150 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
RNF40O75150 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
RNF40O75150 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF40O75150 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF40O75150 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF40O75150 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC16.38■□□□□ 0.21
RNF40O75150 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF40O75150 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF40O75150 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF40O75150 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC16.37■□□□□ 0.21
RNF40O75150 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
RNF40O75150 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF40O75150 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF40O75150 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF40O75150 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF40O75150 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
RNF40O75150 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 184.6 ms