Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC15.27■□□□□ 0.04
AP3B1O00203 AC124283.3-201ENST00000570869 594 ntBASIC15.27■□□□□ 0.04
AP3B1O00203 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
AP3B1O00203 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC15.27■□□□□ 0.04
AP3B1O00203 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC15.27■□□□□ 0.04
AP3B1O00203 AC004790.1-201ENST00000612686 536 ntBASIC15.27■□□□□ 0.04
AP3B1O00203 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC15.27■□□□□ 0.04
AP3B1O00203 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC15.27■□□□□ 0.04
AP3B1O00203 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC15.27■□□□□ 0.04
AP3B1O00203 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
AP3B1O00203 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
AP3B1O00203 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
AP3B1O00203 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
AP3B1O00203 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
AP3B1O00203 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
AP3B1O00203 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
AP3B1O00203 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
AP3B1O00203 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
AP3B1O00203 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
AP3B1O00203 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
AP3B1O00203 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
AP3B1O00203 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
AP3B1O00203 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
AP3B1O00203 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
AP3B1O00203 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
AP3B1O00203 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC15.27■□□□□ 0.03
AP3B1O00203 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
AP3B1O00203 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC15.27■□□□□ 0.03
AP3B1O00203 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
AP3B1O00203 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
AP3B1O00203 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC15.26■□□□□ 0.03
AP3B1O00203 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP3B1O00203 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC15.26■□□□□ 0.03
AP3B1O00203 AC007686.3-201ENST00000619017 3487 ntBASIC15.26■□□□□ 0.03
AP3B1O00203 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
AP3B1O00203 GRK6P1-201ENST00000400595 1711 ntBASIC15.26■□□□□ 0.03
AP3B1O00203 HNRNPA1P48-201ENST00000562726 1377 ntBASIC15.26■□□□□ 0.03
AP3B1O00203 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP3B1O00203 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP3B1O00203 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP3B1O00203 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP3B1O00203 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
AP3B1O00203 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
AP3B1O00203 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
AP3B1O00203 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC15.26■□□□□ 0.03
AP3B1O00203 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC15.26■□□□□ 0.03
AP3B1O00203 BRF1-202ENST00000379932 884 ntTSL 5 BASIC15.26■□□□□ 0.03
AP3B1O00203 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
AP3B1O00203 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC15.26■□□□□ 0.03
AP3B1O00203 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC15.26■□□□□ 0.03
AP3B1O00203 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC15.26■□□□□ 0.03
AP3B1O00203 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC15.26■□□□□ 0.03
AP3B1O00203 SPTLC1P1-201ENST00000447199 261 ntBASIC15.26■□□□□ 0.03
AP3B1O00203 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP3B1O00203 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC15.26■□□□□ 0.03
AP3B1O00203 CYMP-203ENST00000474680 1263 ntBASIC15.26■□□□□ 0.03
AP3B1O00203 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC15.26■□□□□ 0.03
AP3B1O00203 AP001582.1-201ENST00000525856 295 ntBASIC15.26■□□□□ 0.03
AP3B1O00203 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC15.26■□□□□ 0.03
AP3B1O00203 AC123567.1-201ENST00000548294 1261 ntBASIC15.26■□□□□ 0.03
AP3B1O00203 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
AP3B1O00203 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
AP3B1O00203 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC15.26■□□□□ 0.03
AP3B1O00203 AJ011932.1-201ENST00000621707 465 ntBASIC15.26■□□□□ 0.03
AP3B1O00203 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
AP3B1O00203 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC15.26■□□□□ 0.03
AP3B1O00203 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP3B1O00203 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
AP3B1O00203 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC15.26■□□□□ 0.03
AP3B1O00203 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP3B1O00203 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
AP3B1O00203 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP3B1O00203 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
AP3B1O00203 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP3B1O00203 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
AP3B1O00203 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP3B1O00203 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
AP3B1O00203 AC023908.3-201ENST00000564211 3047 ntBASIC15.26■□□□□ 0.03
AP3B1O00203 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
AP3B1O00203 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
AP3B1O00203 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
AP3B1O00203 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC15.26■□□□□ 0.03
AP3B1O00203 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
AP3B1O00203 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
AP3B1O00203 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC15.26■□□□□ 0.03
AP3B1O00203 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP3B1O00203 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
AP3B1O00203 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
AP3B1O00203 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC15.26■□□□□ 0.03
AP3B1O00203 AC015802.1-201ENST00000588104 1449 ntBASIC15.26■□□□□ 0.03
AP3B1O00203 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
AP3B1O00203 INTS4P1-203ENST00000641008 3683 ntBASIC15.25■□□□□ 0.03
AP3B1O00203 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
AP3B1O00203 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
AP3B1O00203 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
AP3B1O00203 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC15.25■□□□□ 0.03
AP3B1O00203 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
AP3B1O00203 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
AP3B1O00203 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
AP3B1O00203 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 90.8 ms