Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 AC026884.1-201ENST00000418296 457 ntBASIC11.39□□□□□ -0.59
COL6A5A8TX70 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 PRMT1P1-201ENST00000604252 1009 ntBASIC11.39□□□□□ -0.59
COL6A5A8TX70 POU5F1-207ENST00000606567 1236 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 ZNF143-202ENST00000396597 1954 ntTSL 2 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 AL008638.4-201ENST00000624792 1315 ntBASIC11.39□□□□□ -0.59
COL6A5A8TX70 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 SERF2-209ENST00000409646 559 ntTSL 4 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 AC131235.2-201ENST00000445553 1057 ntBASIC11.39□□□□□ -0.59
COL6A5A8TX70 PILRA-205ENST00000453419 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
COL6A5A8TX70 MYMX-201ENST00000573382 817 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 Metazoa_SRP.156-201ENST00000622344 262 ntBASIC11.39□□□□□ -0.59
COL6A5A8TX70 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC11.39□□□□□ -0.59
COL6A5A8TX70 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
COL6A5A8TX70 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC11.38□□□□□ -0.59
COL6A5A8TX70 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
COL6A5A8TX70 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
COL6A5A8TX70 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
COL6A5A8TX70 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC11.38□□□□□ -0.59
COL6A5A8TX70 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC11.38□□□□□ -0.59
COL6A5A8TX70 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
COL6A5A8TX70 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 LYPLA2-203ENST00000374503 868 ntTSL 2 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 HNRNPA1P27-201ENST00000412087 955 ntBASIC11.38□□□□□ -0.59
COL6A5A8TX70 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC11.38□□□□□ -0.59
COL6A5A8TX70 AC112220.4-201ENST00000604982 1263 ntBASIC11.38□□□□□ -0.59
COL6A5A8TX70 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 AL513523.2-202ENST00000427283 2040 ntBASIC11.38□□□□□ -0.59
COL6A5A8TX70 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
COL6A5A8TX70 AC092127.1-201ENST00000567093 3455 ntBASIC11.38□□□□□ -0.59
COL6A5A8TX70 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
COL6A5A8TX70 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
COL6A5A8TX70 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
COL6A5A8TX70 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
COL6A5A8TX70 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC11.38□□□□□ -0.59
COL6A5A8TX70 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
COL6A5A8TX70 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
COL6A5A8TX70 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
COL6A5A8TX70 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms