Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 MTHFR-210ENST00000641407 2387 ntBASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 PNMT-202ENST00000394246 821 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 TIMM17BP1-201ENST00000545713 516 ntBASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 GPALPP1-207ENST00000611650 899 ntBASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 DGCR9-201ENST00000609630 2415 ntBASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC39Q9UFE4 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 AC152010.1-201ENST00000415779 2006 ntBASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 5S_rRNA.22-201ENST00000614916 106 ntBASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 DKFZP434A062-201ENST00000573103 5021 ntBASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 AC138969.3-201ENST00000546612 1459 ntBASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 AC138932.2-201ENST00000548268 1459 ntBASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 AC126755.4-201ENST00000549796 1459 ntBASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 AC089987.1-201ENST00000551654 2209 ntBASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CCDC39Q9UFE4 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms