Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC16.71■□□□□ 0.27
VTA1Q9NP79 AC116345.2-201ENST00000512837 523 ntBASIC16.71■□□□□ 0.27
VTA1Q9NP79 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC16.71■□□□□ 0.27
VTA1Q9NP79 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC16.71■□□□□ 0.27
VTA1Q9NP79 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC16.71■□□□□ 0.27
VTA1Q9NP79 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC16.71■□□□□ 0.27
VTA1Q9NP79 AC242376.1-201ENST00000559033 726 ntBASIC16.71■□□□□ 0.27
VTA1Q9NP79 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC16.71■□□□□ 0.27
VTA1Q9NP79 AC006453.1-201ENST00000636037 1257 ntBASIC16.71■□□□□ 0.27
VTA1Q9NP79 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VTA1Q9NP79 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VTA1Q9NP79 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VTA1Q9NP79 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.71■□□□□ 0.27
VTA1Q9NP79 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VTA1Q9NP79 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VTA1Q9NP79 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
VTA1Q9NP79 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
VTA1Q9NP79 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VTA1Q9NP79 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VTA1Q9NP79 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
VTA1Q9NP79 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.26
VTA1Q9NP79 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.71■□□□□ 0.26
VTA1Q9NP79 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VTA1Q9NP79 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.7■□□□□ 0.26
VTA1Q9NP79 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VTA1Q9NP79 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VTA1Q9NP79 AC136759.1-202ENST00000530858 2194 ntBASIC16.7■□□□□ 0.26
VTA1Q9NP79 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VTA1Q9NP79 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
VTA1Q9NP79 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC16.7■□□□□ 0.26
VTA1Q9NP79 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
VTA1Q9NP79 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VTA1Q9NP79 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VTA1Q9NP79 AC239868.1-201ENST00000369385 493 ntBASIC16.7■□□□□ 0.26
VTA1Q9NP79 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VTA1Q9NP79 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VTA1Q9NP79 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VTA1Q9NP79 AL645933.1-201ENST00000440087 609 ntBASIC16.7■□□□□ 0.26
VTA1Q9NP79 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC16.7■□□□□ 0.26
VTA1Q9NP79 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC16.7■□□□□ 0.26
VTA1Q9NP79 RTN3P1-201ENST00000536295 711 ntBASIC16.7■□□□□ 0.26
VTA1Q9NP79 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC16.7■□□□□ 0.26
VTA1Q9NP79 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC16.7■□□□□ 0.26
VTA1Q9NP79 MIR4754-201ENST00000582477 89 ntBASIC16.7■□□□□ 0.26
VTA1Q9NP79 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC16.7■□□□□ 0.26
VTA1Q9NP79 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC16.7■□□□□ 0.26
VTA1Q9NP79 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC16.7■□□□□ 0.26
VTA1Q9NP79 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
VTA1Q9NP79 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
VTA1Q9NP79 IRF3-215ENST00000596822 823 ntTSL 3 BASIC16.7■□□□□ 0.26
VTA1Q9NP79 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC16.7■□□□□ 0.26
VTA1Q9NP79 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VTA1Q9NP79 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VTA1Q9NP79 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VTA1Q9NP79 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
VTA1Q9NP79 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VTA1Q9NP79 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC16.7■□□□□ 0.26
VTA1Q9NP79 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VTA1Q9NP79 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC16.7■□□□□ 0.26
VTA1Q9NP79 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VTA1Q9NP79 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VTA1Q9NP79 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VTA1Q9NP79 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC16.7■□□□□ 0.26
VTA1Q9NP79 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VTA1Q9NP79 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC16.7■□□□□ 0.26
VTA1Q9NP79 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VTA1Q9NP79 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC16.7■□□□□ 0.26
VTA1Q9NP79 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VTA1Q9NP79 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
VTA1Q9NP79 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VTA1Q9NP79 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VTA1Q9NP79 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
VTA1Q9NP79 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC16.69■□□□□ 0.26
VTA1Q9NP79 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC16.69■□□□□ 0.26
VTA1Q9NP79 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.69■□□□□ 0.26
VTA1Q9NP79 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
VTA1Q9NP79 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VTA1Q9NP79 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VTA1Q9NP79 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.69■□□□□ 0.26
VTA1Q9NP79 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC16.69■□□□□ 0.26
VTA1Q9NP79 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VTA1Q9NP79 UFM1-202ENST00000379649 846 ntTSL 4 BASIC16.69■□□□□ 0.26
VTA1Q9NP79 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC16.69■□□□□ 0.26
VTA1Q9NP79 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC16.69■□□□□ 0.26
VTA1Q9NP79 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC16.69■□□□□ 0.26
VTA1Q9NP79 AC073150.1-201ENST00000450406 1084 ntBASIC16.69■□□□□ 0.26
VTA1Q9NP79 CEP164P1-201ENST00000455142 418 ntBASIC16.69■□□□□ 0.26
VTA1Q9NP79 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC16.69■□□□□ 0.26
VTA1Q9NP79 AC006122.1-201ENST00000493323 440 ntBASIC16.69■□□□□ 0.26
VTA1Q9NP79 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC16.69■□□□□ 0.26
VTA1Q9NP79 POU5F1P2-201ENST00000521750 823 ntBASIC16.69■□□□□ 0.26
VTA1Q9NP79 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC16.69■□□□□ 0.26
VTA1Q9NP79 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC16.69■□□□□ 0.26
VTA1Q9NP79 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC16.69■□□□□ 0.26
VTA1Q9NP79 SPCS2P2-201ENST00000603270 608 ntBASIC16.69■□□□□ 0.26
VTA1Q9NP79 AC012044.1-201ENST00000603431 297 ntBASIC16.69■□□□□ 0.26
VTA1Q9NP79 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VTA1Q9NP79 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
VTA1Q9NP79 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
VTA1Q9NP79 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms