Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS52Q8N1B4 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS52Q8N1B4 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
VPS52Q8N1B4 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC16.42■□□□□ 0.22
VPS52Q8N1B4 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC16.42■□□□□ 0.22
VPS52Q8N1B4 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VPS52Q8N1B4 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS52Q8N1B4 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.42■□□□□ 0.22
VPS52Q8N1B4 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VPS52Q8N1B4 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS52Q8N1B4 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC16.42■□□□□ 0.22
VPS52Q8N1B4 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS52Q8N1B4 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC16.42■□□□□ 0.22
VPS52Q8N1B4 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VPS52Q8N1B4 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VPS52Q8N1B4 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VPS52Q8N1B4 AC020658.6-201ENST00000623564 1870 ntBASIC16.42■□□□□ 0.22
VPS52Q8N1B4 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 CYGB-203ENST00000589145 788 ntTSL 3 BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC16.41■□□□□ 0.22
VPS52Q8N1B4 AC244452.3-201ENST00000636814 210 ntBASIC16.41■□□□□ 0.22
VPS52Q8N1B4 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 AMT-224ENST00000635808 1610 ntTSL 5 BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
VPS52Q8N1B4 AC013268.4-201ENST00000637413 2228 ntBASIC16.41■□□□□ 0.22
VPS52Q8N1B4 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 LRRC59-203ENST00000576448 1531 ntBASIC16.4■□□□□ 0.22
VPS52Q8N1B4 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 HARS-202ENST00000415192 1401 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 AP006547.1-201ENST00000563435 692 ntBASIC16.4■□□□□ 0.22
VPS52Q8N1B4 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 SSR4P1-203ENST00000599569 2260 ntBASIC16.4■□□□□ 0.22
VPS52Q8N1B4 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS52Q8N1B4 PPT1-215ENST00000641471 2368 ntBASIC16.4■□□□□ 0.22
VPS52Q8N1B4 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
VPS52Q8N1B4 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
VPS52Q8N1B4 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
VPS52Q8N1B4 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 125.7 ms