Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 BAIAP2L1-201ENST00000005260 3622 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 MDH2-204ENST00000443006 2020 ntTSL 2 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 POC1B-GALNT4-202ENST00000548729 5436 ntAPPRIS P1 TSL 2 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 STARD13-205ENST00000439831 945 ntTSL 2 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 NKTR-203ENST00000442970 646 ntTSL 2 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 PPOX-214ENST00000535223 664 ntTSL 3 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 DGCR10-201ENST00000609839 495 ntBASIC9.33□□□□□ -0.92
LINC00643Q86TS7 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 KCNC2-201ENST00000298972 3563 ntAPPRIS ALT2 TSL 5 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 LITAF-221ENST00000622633 2467 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 DCAF16-201ENST00000382247 4548 ntAPPRIS P1 TSL 2 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 DHX30-206ENST00000446256 3660 ntAPPRIS P2 TSL 2 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 TXNRD1-202ENST00000388854 4277 ntTSL 5 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 ARHGAP45-203ENST00000543365 3750 ntAPPRIS ALT2 TSL 2 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 MYO1C-202ENST00000361007 4734 ntAPPRIS P3 TSL 5 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 C10orf105-201ENST00000398786 4730 ntAPPRIS P1 TSL 2 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 CENPP-203ENST00000375587 8766 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 ZNF197-204ENST00000383745 2935 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 SLX4-201ENST00000294008 7307 ntAPPRIS P1 TSL 5 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 TRGV9-201ENST00000444775 1735 ntAPPRIS P1 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 AGAP10P-201ENST00000454844 2418 ntBASIC9.33□□□□□ -0.92
LINC00643Q86TS7 LINC01024-201ENST00000499203 2769 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 KCNAB1-215ENST00000618897 4437 ntTSL 5 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 RIC8B-201ENST00000355478 3207 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 ABCA3-201ENST00000301732 6609 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 FAM131B-202ENST00000409346 4295 ntAPPRIS P3 TSL 5 BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 FBXW8-202ENST00000455858 4648 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 AL512791.2-201ENST00000615251 4609 ntBASIC9.33□□□□□ -0.92
LINC00643Q86TS7 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
LINC00643Q86TS7 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 ARHGAP24-203ENST00000395184 4661 ntAPPRIS P1 TSL 2 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 STK11IP-204ENST00000456909 3615 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 AC090114.2-201ENST00000608477 7054 ntBASIC9.32□□□□□ -0.92
LINC00643Q86TS7 CELSR3-201ENST00000164024 11956 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 MAP7-208ENST00000617204 4536 ntAPPRIS ALT2 TSL 2 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 EPM2A-207ENST00000611340 2786 ntTSL 2 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 TAOK2-201ENST00000279394 4246 ntAPPRIS ALT1 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 PCDH12-201ENST00000231484 6562 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 PI4KAP2-201ENST00000360806 2080 ntBASIC9.32□□□□□ -0.92
LINC00643Q86TS7 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 CSNK1G1-205ENST00000607537 2083 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 EIF3L-214ENST00000624234 2091 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 NOL4L-203ENST00000359676 5991 ntTSL 2 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 SLC22A6-202ENST00000377871 2151 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 AL391647.1-201ENST00000395664 511 ntBASIC9.32□□□□□ -0.92
LINC00643Q86TS7 CDK2AP2P3-201ENST00000422476 372 ntBASIC9.32□□□□□ -0.92
LINC00643Q86TS7 GHSR-202ENST00000427970 912 ntBASIC9.32□□□□□ -0.92
LINC00643Q86TS7 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 LY6E-213ENST00000522528 606 ntTSL 3 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 AL031432.3-201ENST00000607698 485 ntBASIC9.32□□□□□ -0.92
LINC00643Q86TS7 MDK-213ENST00000617138 635 ntTSL 2 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 SERF2-217ENST00000630046 862 ntTSL 5 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 CEACAM20-203ENST00000614924 1809 ntAPPRIS P4 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 RBM12-202ENST00000374104 5213 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 PPP4R3B-203ENST00000611717 5243 ntAPPRIS P3 TSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 AC036108.2-201ENST00000566974 2562 ntTSL 2 BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 MZF1-AS1-202ENST00000600534 2567 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
LINC00643Q86TS7 PTPRK-207ENST00000368226 6087 ntAPPRIS P3 TSL 1 (best) BASIC9.32□□□□□ -0.92
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms