Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF20Q5VTR2 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF20Q5VTR2 INTS4P1-203ENST00000641008 3683 ntBASIC18.05■□□□□ 0.48
RNF20Q5VTR2 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF20Q5VTR2 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC18.05■□□□□ 0.48
RNF20Q5VTR2 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RNF20Q5VTR2 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF20Q5VTR2 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF20Q5VTR2 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC18.05■□□□□ 0.48
RNF20Q5VTR2 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF20Q5VTR2 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF20Q5VTR2 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 AC140479.7-201ENST00000636301 2332 ntBASIC18.04■□□□□ 0.48
RNF20Q5VTR2 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 ACTBP8-201ENST00000403258 1108 ntBASIC18.04■□□□□ 0.48
RNF20Q5VTR2 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 TP53TG3HP-202ENST00000569755 579 ntBASIC18.04■□□□□ 0.48
RNF20Q5VTR2 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 WFDC1-204ENST00000613603 549 ntBASIC18.04■□□□□ 0.48
RNF20Q5VTR2 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 AC067750.1-201ENST00000608826 6545 ntBASIC18.04■□□□□ 0.48
RNF20Q5VTR2 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF20Q5VTR2 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 MPI-203ENST00000535694 1523 ntTSL 2 BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 AC009486.1-201ENST00000569860 813 ntBASIC18.03■□□□□ 0.48
RNF20Q5VTR2 PAM16-204ENST00000571941 674 ntTSL 3 BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 KSR1-207ENST00000578981 748 ntTSL 4 BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 AC055811.4-201ENST00000624039 1754 ntBASIC18.03■□□□□ 0.48
RNF20Q5VTR2 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC18.03■□□□□ 0.48
RNF20Q5VTR2 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
RNF20Q5VTR2 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF20Q5VTR2 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
RNF20Q5VTR2 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF20Q5VTR2 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
RNF20Q5VTR2 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
RNF20Q5VTR2 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF20Q5VTR2 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
RNF20Q5VTR2 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms