Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
TFF3Q07654 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
TFF3Q07654 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
TFF3Q07654 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
TFF3Q07654 ILF3-AS1-201ENST00000591501 1983 ntBASIC13.24□□□□□ -0.29
TFF3Q07654 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
TFF3Q07654 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC13.24□□□□□ -0.29
TFF3Q07654 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC13.24□□□□□ -0.29
TFF3Q07654 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
TFF3Q07654 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC13.24□□□□□ -0.29
TFF3Q07654 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
TFF3Q07654 MPV17-204ENST00000399052 749 ntTSL 4 BASIC13.24□□□□□ -0.29
TFF3Q07654 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
TFF3Q07654 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
TFF3Q07654 ACTG1P2-201ENST00000415776 1125 ntBASIC13.24□□□□□ -0.29
TFF3Q07654 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC13.24□□□□□ -0.29
TFF3Q07654 ACTG1P11-201ENST00000425411 1125 ntBASIC13.24□□□□□ -0.29
TFF3Q07654 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC13.24□□□□□ -0.29
TFF3Q07654 AC011742.3-201ENST00000439053 820 ntBASIC13.24□□□□□ -0.29
TFF3Q07654 Z97180.1-201ENST00000445173 988 ntBASIC13.24□□□□□ -0.29
TFF3Q07654 AC021723.1-201ENST00000486306 515 ntBASIC13.24□□□□□ -0.29
TFF3Q07654 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
TFF3Q07654 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC13.24□□□□□ -0.29
TFF3Q07654 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC13.24□□□□□ -0.29
TFF3Q07654 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
TFF3Q07654 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC13.24□□□□□ -0.29
TFF3Q07654 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC13.24□□□□□ -0.29
TFF3Q07654 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC13.24□□□□□ -0.29
TFF3Q07654 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC13.24□□□□□ -0.29
TFF3Q07654 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC13.24□□□□□ -0.29
TFF3Q07654 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
TFF3Q07654 AC079336.7-201ENST00000623428 1078 ntBASIC13.24□□□□□ -0.29
TFF3Q07654 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC13.24□□□□□ -0.29
TFF3Q07654 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
TFF3Q07654 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC13.24□□□□□ -0.29
TFF3Q07654 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC13.24□□□□□ -0.29
TFF3Q07654 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
TFF3Q07654 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
TFF3Q07654 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
TFF3Q07654 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
TFF3Q07654 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
TFF3Q07654 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
TFF3Q07654 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC13.24□□□□□ -0.29
TFF3Q07654 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC13.24□□□□□ -0.29
TFF3Q07654 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
TFF3Q07654 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
TFF3Q07654 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
TFF3Q07654 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
TFF3Q07654 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
TFF3Q07654 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC13.23□□□□□ -0.29
TFF3Q07654 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC13.23□□□□□ -0.29
TFF3Q07654 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
TFF3Q07654 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
TFF3Q07654 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC13.23□□□□□ -0.29
TFF3Q07654 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC13.23□□□□□ -0.29
TFF3Q07654 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
TFF3Q07654 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
TFF3Q07654 AC104457.1-201ENST00000401024 814 ntBASIC13.23□□□□□ -0.29
TFF3Q07654 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
TFF3Q07654 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC13.23□□□□□ -0.29
TFF3Q07654 HLA-K-203ENST00000430151 1046 ntBASIC13.23□□□□□ -0.29
TFF3Q07654 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 AC253536.4-201ENST00000440539 267 ntBASIC13.23□□□□□ -0.29
TFF3Q07654 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC13.23□□□□□ -0.29
TFF3Q07654 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC13.23□□□□□ -0.29
TFF3Q07654 NUP210P1-202ENST00000504322 710 ntBASIC13.23□□□□□ -0.29
TFF3Q07654 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 CSH2-206ENST00000560142 749 ntTSL 5 BASIC13.23□□□□□ -0.29
TFF3Q07654 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC13.23□□□□□ -0.29
TFF3Q07654 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
TFF3Q07654 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC13.23□□□□□ -0.29
TFF3Q07654 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms