Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SUMO3P55854 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SUMO3P55854 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SUMO3P55854 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SUMO3P55854 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SUMO3P55854 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
SUMO3P55854 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SUMO3P55854 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SUMO3P55854 AC234783.1-201ENST00000441761 496 ntBASIC13.63□□□□□ -0.23
SUMO3P55854 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
SUMO3P55854 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC13.63□□□□□ -0.23
SUMO3P55854 AC131206.1-201ENST00000538078 1211 ntBASIC13.63□□□□□ -0.23
SUMO3P55854 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC13.63□□□□□ -0.23
SUMO3P55854 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC13.63□□□□□ -0.23
SUMO3P55854 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC13.63□□□□□ -0.23
SUMO3P55854 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC13.63□□□□□ -0.23
SUMO3P55854 ECM1P1-201ENST00000604092 1279 ntBASIC13.63□□□□□ -0.23
SUMO3P55854 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
SUMO3P55854 AC138951.2-201ENST00000623455 1161 ntBASIC13.63□□□□□ -0.23
SUMO3P55854 AC006453.4-201ENST00000636949 1252 ntBASIC13.63□□□□□ -0.23
SUMO3P55854 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SUMO3P55854 ANKRD30BP2-201ENST00000435744 1610 ntBASIC13.63□□□□□ -0.23
SUMO3P55854 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SUMO3P55854 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SUMO3P55854 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SUMO3P55854 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
SUMO3P55854 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SUMO3P55854 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
SUMO3P55854 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.63□□□□□ -0.23
SUMO3P55854 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SUMO3P55854 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
SUMO3P55854 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SUMO3P55854 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SUMO3P55854 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SUMO3P55854 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SUMO3P55854 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SUMO3P55854 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC13.63□□□□□ -0.23
SUMO3P55854 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SUMO3P55854 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SUMO3P55854 AC126755.1-201ENST00000525846 6405 ntBASIC13.63□□□□□ -0.23
SUMO3P55854 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
SUMO3P55854 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SUMO3P55854 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC13.62□□□□□ -0.23
SUMO3P55854 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC13.62□□□□□ -0.23
SUMO3P55854 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
SUMO3P55854 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SUMO3P55854 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC13.62□□□□□ -0.23
SUMO3P55854 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
SUMO3P55854 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SUMO3P55854 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SUMO3P55854 AMT-204ENST00000427987 1646 ntTSL 5 BASIC13.62□□□□□ -0.23
SUMO3P55854 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SUMO3P55854 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
SUMO3P55854 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SUMO3P55854 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC13.62□□□□□ -0.23
SUMO3P55854 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
SUMO3P55854 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
SUMO3P55854 GZMB-202ENST00000382540 816 ntTSL 5 BASIC13.62□□□□□ -0.23
SUMO3P55854 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SUMO3P55854 FAM197Y7-201ENST00000432892 766 ntBASIC13.62□□□□□ -0.23
SUMO3P55854 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC13.62□□□□□ -0.23
SUMO3P55854 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC13.62□□□□□ -0.23
SUMO3P55854 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SUMO3P55854 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC13.62□□□□□ -0.23
SUMO3P55854 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC13.62□□□□□ -0.23
SUMO3P55854 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SUMO3P55854 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC13.62□□□□□ -0.23
SUMO3P55854 NAA50-208ENST00000497255 789 ntTSL 5 BASIC13.62□□□□□ -0.23
SUMO3P55854 ALG3P1-201ENST00000508806 1114 ntBASIC13.62□□□□□ -0.23
SUMO3P55854 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC13.62□□□□□ -0.23
SUMO3P55854 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC13.62□□□□□ -0.23
SUMO3P55854 AP000812.2-201ENST00000538934 718 ntBASIC13.62□□□□□ -0.23
SUMO3P55854 AC079316.1-201ENST00000548397 411 ntBASIC13.62□□□□□ -0.23
SUMO3P55854 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC13.62□□□□□ -0.23
SUMO3P55854 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SUMO3P55854 VPS18-202ENST00000558474 873 ntTSL 3 BASIC13.62□□□□□ -0.23
SUMO3P55854 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC13.62□□□□□ -0.23
SUMO3P55854 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SUMO3P55854 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SUMO3P55854 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC13.62□□□□□ -0.23
SUMO3P55854 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC13.62□□□□□ -0.23
SUMO3P55854 RHOXF1P1-202ENST00000635473 501 ntBASIC13.62□□□□□ -0.23
SUMO3P55854 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
SUMO3P55854 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC13.62□□□□□ -0.23
SUMO3P55854 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
SUMO3P55854 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC13.62□□□□□ -0.23
SUMO3P55854 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC13.62□□□□□ -0.23
SUMO3P55854 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
SUMO3P55854 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC13.62□□□□□ -0.23
SUMO3P55854 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SUMO3P55854 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
SUMO3P55854 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC13.62□□□□□ -0.23
SUMO3P55854 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC13.62□□□□□ -0.23
SUMO3P55854 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SUMO3P55854 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC13.62□□□□□ -0.23
SUMO3P55854 FKBP4P6-201ENST00000457486 1332 ntBASIC13.62□□□□□ -0.23
SUMO3P55854 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SUMO3P55854 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SUMO3P55854 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SUMO3P55854 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms