Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HTTP42858 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC16.39■□□□□ 0.21
HTTP42858 AC092580.1-201ENST00000433998 658 ntBASIC16.39■□□□□ 0.21
HTTP42858 AL451000.1-201ENST00000451300 1186 ntBASIC16.39■□□□□ 0.21
HTTP42858 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC16.39■□□□□ 0.21
HTTP42858 RN7SL23P-201ENST00000484055 275 ntBASIC16.39■□□□□ 0.21
HTTP42858 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
HTTP42858 AC020904.3-201ENST00000624199 442 ntBASIC16.39■□□□□ 0.21
HTTP42858 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HTTP42858 STRN-202ENST00000379213 2254 ntTSL 5 BASIC16.39■□□□□ 0.21
HTTP42858 SSR4P1-203ENST00000599569 2260 ntBASIC16.39■□□□□ 0.21
HTTP42858 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HTTP42858 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HTTP42858 LINC00554-201ENST00000564841 3011 ntBASIC16.39■□□□□ 0.21
HTTP42858 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HTTP42858 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HTTP42858 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.39■□□□□ 0.21
HTTP42858 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HTTP42858 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HTTP42858 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HTTP42858 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC16.39■□□□□ 0.21
HTTP42858 AC080013.5-201ENST00000607044 679 ntBASIC16.39■□□□□ 0.21
HTTP42858 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC16.39■□□□□ 0.21
HTTP42858 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HTTP42858 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.39■□□□□ 0.21
HTTP42858 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HTTP42858 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HTTP42858 HNRNPA1P27-201ENST00000412087 955 ntBASIC16.39■□□□□ 0.21
HTTP42858 PPP1R2P4-201ENST00000424051 595 ntBASIC16.39■□□□□ 0.21
HTTP42858 SOD2-205ENST00000444946 917 ntTSL 2 BASIC16.39■□□□□ 0.21
HTTP42858 HIST1H2APS2-201ENST00000454426 370 ntBASIC16.39■□□□□ 0.21
HTTP42858 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC16.39■□□□□ 0.21
HTTP42858 AC110057.1-201ENST00000636031 898 ntBASIC16.39■□□□□ 0.21
HTTP42858 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.39■□□□□ 0.21
HTTP42858 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HTTP42858 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HTTP42858 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HTTP42858 AC139712.1-201ENST00000378256 1875 ntBASIC16.38■□□□□ 0.21
HTTP42858 AC019109.1-201ENST00000401725 1874 ntBASIC16.38■□□□□ 0.21
HTTP42858 JTB-202ENST00000356648 1040 ntTSL 2 BASIC16.38■□□□□ 0.21
HTTP42858 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
HTTP42858 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC16.38■□□□□ 0.21
HTTP42858 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
HTTP42858 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HTTP42858 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
HTTP42858 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
HTTP42858 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC16.38■□□□□ 0.21
HTTP42858 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.38■□□□□ 0.21
HTTP42858 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC16.38■□□□□ 0.21
HTTP42858 RN7SL277P-201ENST00000481521 288 ntBASIC16.38■□□□□ 0.21
HTTP42858 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HTTP42858 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HTTP42858 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.38■□□□□ 0.21
HTTP42858 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC16.38■□□□□ 0.21
HTTP42858 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC16.38■□□□□ 0.21
HTTP42858 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HTTP42858 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
HTTP42858 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HTTP42858 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HTTP42858 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HTTP42858 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
HTTP42858 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HTTP42858 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC16.37■□□□□ 0.21
HTTP42858 RNLS-203ENST00000437752 525 ntTSL 2 BASIC16.37■□□□□ 0.21
HTTP42858 AC098934.1-203ENST00000442868 1262 ntBASIC16.37■□□□□ 0.21
HTTP42858 RPL18AP8-201ENST00000486071 528 ntBASIC16.37■□□□□ 0.21
HTTP42858 ALG1L3P-201ENST00000503331 765 ntBASIC16.37■□□□□ 0.21
HTTP42858 RNA5SP406-201ENST00000516106 112 ntBASIC16.37■□□□□ 0.21
HTTP42858 COX5A-205ENST00000568517 582 ntTSL 3 BASIC16.37■□□□□ 0.21
HTTP42858 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HTTP42858 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
HTTP42858 AC004466.2-201ENST00000614749 516 ntBASIC16.37■□□□□ 0.21
HTTP42858 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC16.37■□□□□ 0.21
HTTP42858 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HTTP42858 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HTTP42858 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.37■□□□□ 0.21
HTTP42858 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HTTP42858 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.37■□□□□ 0.21
HTTP42858 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HTTP42858 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HTTP42858 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
HTTP42858 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HTTP42858 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC16.37■□□□□ 0.21
HTTP42858 LINC01101-201ENST00000622953 1884 ntBASIC16.37■□□□□ 0.21
HTTP42858 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HTTP42858 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
HTTP42858 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HTTP42858 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HTTP42858 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC16.37■□□□□ 0.21
HTTP42858 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HTTP42858 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
HTTP42858 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
HTTP42858 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC16.36■□□□□ 0.21
HTTP42858 RN7SL564P-201ENST00000496309 250 ntBASIC16.36■□□□□ 0.21
HTTP42858 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC16.36■□□□□ 0.21
HTTP42858 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HTTP42858 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC16.36■□□□□ 0.21
HTTP42858 AC007250.1-201ENST00000608934 338 ntBASIC16.36■□□□□ 0.21
HTTP42858 AL118522.1-201ENST00000611368 560 ntBASIC16.36■□□□□ 0.21
HTTP42858 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms