Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC141586.1-203ENST00000567242 366 ntBASIC14.12□□□□□ -0.15
COL5A1P20908 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
COL5A1P20908 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC14.12□□□□□ -0.15
COL5A1P20908 AC009084.3-201ENST00000623356 437 ntBASIC14.12□□□□□ -0.15
COL5A1P20908 AC138466.5-201ENST00000624002 808 ntBASIC14.12□□□□□ -0.15
COL5A1P20908 AC009145.4-201ENST00000625119 1294 ntBASIC14.12□□□□□ -0.15
COL5A1P20908 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC14.12□□□□□ -0.15
COL5A1P20908 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC14.12□□□□□ -0.15
COL5A1P20908 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL5A1P20908 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL5A1P20908 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL5A1P20908 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL5A1P20908 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL5A1P20908 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL5A1P20908 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL5A1P20908 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC14.12□□□□□ -0.15
COL5A1P20908 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
COL5A1P20908 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC14.11□□□□□ -0.15
COL5A1P20908 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
COL5A1P20908 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL5A1P20908 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL5A1P20908 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL5A1P20908 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC14.11□□□□□ -0.15
COL5A1P20908 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.11□□□□□ -0.15
COL5A1P20908 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL5A1P20908 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
COL5A1P20908 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.11□□□□□ -0.15
COL5A1P20908 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL5A1P20908 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL5A1P20908 MIR1227-201ENST00000408484 88 ntBASIC14.11□□□□□ -0.15
COL5A1P20908 HNRNPA1P27-201ENST00000412087 955 ntBASIC14.11□□□□□ -0.15
COL5A1P20908 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC14.11□□□□□ -0.15
COL5A1P20908 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC14.11□□□□□ -0.15
COL5A1P20908 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC14.11□□□□□ -0.15
COL5A1P20908 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC14.11□□□□□ -0.15
COL5A1P20908 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC14.11□□□□□ -0.15
COL5A1P20908 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC14.11□□□□□ -0.15
COL5A1P20908 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL5A1P20908 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL5A1P20908 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL5A1P20908 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL5A1P20908 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL5A1P20908 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
COL5A1P20908 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL5A1P20908 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL5A1P20908 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL5A1P20908 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL5A1P20908 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.11□□□□□ -0.15
COL5A1P20908 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
COL5A1P20908 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL5A1P20908 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.11□□□□□ -0.15
COL5A1P20908 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL5A1P20908 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC14.11□□□□□ -0.15
COL5A1P20908 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL5A1P20908 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL5A1P20908 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
COL5A1P20908 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL5A1P20908 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL5A1P20908 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
COL5A1P20908 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC14.11□□□□□ -0.15
COL5A1P20908 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC14.11□□□□□ -0.15
COL5A1P20908 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC14.11□□□□□ -0.15
COL5A1P20908 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL5A1P20908 AC003686.1-201ENST00000550956 1034 ntBASIC14.11□□□□□ -0.15
COL5A1P20908 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL5A1P20908 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC14.11□□□□□ -0.15
COL5A1P20908 AC005041.3-201ENST00000606287 649 ntBASIC14.11□□□□□ -0.15
COL5A1P20908 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL5A1P20908 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC14.11□□□□□ -0.15
COL5A1P20908 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC14.11□□□□□ -0.15
COL5A1P20908 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL5A1P20908 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC14.1□□□□□ -0.15
COL5A1P20908 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
COL5A1P20908 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL5A1P20908 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC14.1□□□□□ -0.15
COL5A1P20908 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL5A1P20908 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL5A1P20908 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL5A1P20908 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL5A1P20908 GPI-205ENST00000586425 1799 ntTSL 5 BASIC14.1□□□□□ -0.15
COL5A1P20908 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL5A1P20908 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC14.1□□□□□ -0.15
COL5A1P20908 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC14.1□□□□□ -0.15
COL5A1P20908 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
COL5A1P20908 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.1□□□□□ -0.15
COL5A1P20908 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL5A1P20908 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL5A1P20908 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
COL5A1P20908 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC14.1□□□□□ -0.15
COL5A1P20908 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
COL5A1P20908 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL5A1P20908 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL5A1P20908 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
COL5A1P20908 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC14.1□□□□□ -0.15
COL5A1P20908 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC14.1□□□□□ -0.15
COL5A1P20908 PSMD4P1-201ENST00000433951 1109 ntBASIC14.1□□□□□ -0.15
COL5A1P20908 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC14.1□□□□□ -0.15
COL5A1P20908 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL5A1P20908 IGHVIII-5-2-201ENST00000522505 261 ntBASIC14.1□□□□□ -0.15
COL5A1P20908 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms