Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.38□□□□□ -0.11
SDC1P18827 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.38□□□□□ -0.11
SDC1P18827 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC14.38□□□□□ -0.11
SDC1P18827 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.38□□□□□ -0.11
SDC1P18827 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC14.38□□□□□ -0.11
SDC1P18827 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.38□□□□□ -0.11
SDC1P18827 AC124283.3-201ENST00000570869 594 ntBASIC14.38□□□□□ -0.11
SDC1P18827 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.38□□□□□ -0.11
SDC1P18827 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.38□□□□□ -0.11
SDC1P18827 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
SDC1P18827 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
SDC1P18827 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.38□□□□□ -0.11
SDC1P18827 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.38□□□□□ -0.11
SDC1P18827 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
SDC1P18827 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
SDC1P18827 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SDC1P18827 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDC1P18827 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDC1P18827 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC14.37□□□□□ -0.11
SDC1P18827 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDC1P18827 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SDC1P18827 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDC1P18827 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
SDC1P18827 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14.37□□□□□ -0.11
SDC1P18827 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDC1P18827 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
SDC1P18827 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDC1P18827 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDC1P18827 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDC1P18827 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC14.37□□□□□ -0.11
SDC1P18827 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC14.37□□□□□ -0.11
SDC1P18827 AL442647.2-201ENST00000429864 857 ntBASIC14.37□□□□□ -0.11
SDC1P18827 AP001582.1-201ENST00000525856 295 ntBASIC14.37□□□□□ -0.11
SDC1P18827 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.37□□□□□ -0.11
SDC1P18827 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC14.37□□□□□ -0.11
SDC1P18827 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.37□□□□□ -0.11
SDC1P18827 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
SDC1P18827 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC14.37□□□□□ -0.11
SDC1P18827 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.37□□□□□ -0.11
SDC1P18827 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
SDC1P18827 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDC1P18827 AC006538.3-201ENST00000612495 578 ntBASIC14.37□□□□□ -0.11
SDC1P18827 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
SDC1P18827 KRT8P22-201ENST00000562317 1415 ntBASIC14.37□□□□□ -0.11
SDC1P18827 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC14.37□□□□□ -0.11
SDC1P18827 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SDC1P18827 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
SDC1P18827 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC14.37□□□□□ -0.11
SDC1P18827 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
SDC1P18827 AC152010.1-201ENST00000415779 2006 ntBASIC14.37□□□□□ -0.11
SDC1P18827 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC14.37□□□□□ -0.11
SDC1P18827 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC14.37□□□□□ -0.11
SDC1P18827 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDC1P18827 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC14.37□□□□□ -0.11
SDC1P18827 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
SDC1P18827 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC14.37□□□□□ -0.11
SDC1P18827 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC14.37□□□□□ -0.11
SDC1P18827 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
SDC1P18827 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDC1P18827 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
SDC1P18827 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.37□□□□□ -0.11
SDC1P18827 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
SDC1P18827 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
SDC1P18827 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
SDC1P18827 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDC1P18827 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SDC1P18827 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC14.36□□□□□ -0.11
SDC1P18827 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC14.36□□□□□ -0.11
SDC1P18827 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC14.36□□□□□ -0.11
SDC1P18827 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDC1P18827 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SDC1P18827 AC136759.1-202ENST00000530858 2194 ntBASIC14.36□□□□□ -0.11
SDC1P18827 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDC1P18827 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SDC1P18827 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
SDC1P18827 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
SDC1P18827 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SDC1P18827 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDC1P18827 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDC1P18827 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDC1P18827 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.36□□□□□ -0.11
SDC1P18827 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.36□□□□□ -0.11
SDC1P18827 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC14.36□□□□□ -0.11
SDC1P18827 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDC1P18827 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.36□□□□□ -0.11
SDC1P18827 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDC1P18827 UGT1A2P-201ENST00000454886 866 ntBASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms