Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 SERF2-209ENST00000409646 559 ntTSL 4 BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 WT1-AS_6.1-201ENST00000614919 121 ntBASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 AC242376.2-201ENST00000619355 883 ntBASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 AC027601.3-201ENST00000622907 509 ntBASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 AC009084.3-201ENST00000623356 437 ntBASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 STK26-204ENST00000481105 1835 ntTSL 2 BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
CSB-PGBD3P0DP91 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 FRMPD2B-201ENST00000431305 1347 ntBASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 CICP12-201ENST00000455801 843 ntBASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 AP002803.1-201ENST00000528836 498 ntBASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 MIR6842-201ENST00000612539 65 ntBASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 MIR6769A-201ENST00000617340 73 ntBASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 YRDCP1-201ENST00000621419 643 ntBASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 AC092850.2-201ENST00000623821 2697 ntBASIC19.79■□□□□ 0.76
CSB-PGBD3P0DP91 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC19.78■□□□□ 0.76
CSB-PGBD3P0DP91 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC19.78■□□□□ 0.76
CSB-PGBD3P0DP91 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CSB-PGBD3P0DP91 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CSB-PGBD3P0DP91 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CSB-PGBD3P0DP91 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CSB-PGBD3P0DP91 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CSB-PGBD3P0DP91 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC19.78■□□□□ 0.76
CSB-PGBD3P0DP91 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CSB-PGBD3P0DP91 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CSB-PGBD3P0DP91 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CSB-PGBD3P0DP91 NCR3-202ENST00000376071 541 ntTSL 5 BASIC19.78■□□□□ 0.76
CSB-PGBD3P0DP91 PFN2-202ENST00000423691 911 ntTSL 2 BASIC19.78■□□□□ 0.76
CSB-PGBD3P0DP91 AL592076.1-201ENST00000424448 303 ntBASIC19.78■□□□□ 0.76
CSB-PGBD3P0DP91 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC19.78■□□□□ 0.76
CSB-PGBD3P0DP91 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CSB-PGBD3P0DP91 RPL7P35-201ENST00000446943 740 ntBASIC19.78■□□□□ 0.76
CSB-PGBD3P0DP91 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC19.78■□□□□ 0.76
CSB-PGBD3P0DP91 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC19.78■□□□□ 0.76
CSB-PGBD3P0DP91 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CSB-PGBD3P0DP91 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
CSB-PGBD3P0DP91 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms