Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.78■□□□□ 0.44
HMGB1P09429 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC17.78■□□□□ 0.44
HMGB1P09429 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
HMGB1P09429 GOLGA8DP-202ENST00000341390 2184 ntBASIC17.78■□□□□ 0.44
HMGB1P09429 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB1P09429 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC17.78■□□□□ 0.44
HMGB1P09429 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
HMGB1P09429 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB1P09429 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC17.78■□□□□ 0.44
HMGB1P09429 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB1P09429 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB1P09429 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HMGB1P09429 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
HMGB1P09429 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGB1P09429 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGB1P09429 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
HMGB1P09429 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC17.77■□□□□ 0.44
HMGB1P09429 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC17.77■□□□□ 0.44
HMGB1P09429 AC005912.2-201ENST00000619492 2400 ntBASIC17.77■□□□□ 0.44
HMGB1P09429 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HMGB1P09429 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC17.77■□□□□ 0.44
HMGB1P09429 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HMGB1P09429 TPT1P11-201ENST00000458482 498 ntBASIC17.77■□□□□ 0.44
HMGB1P09429 RN7SL752P-201ENST00000463779 287 ntBASIC17.77■□□□□ 0.44
HMGB1P09429 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC17.77■□□□□ 0.44
HMGB1P09429 TDH-203ENST00000531764 1110 ntBASIC17.77■□□□□ 0.44
HMGB1P09429 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC17.77■□□□□ 0.44
HMGB1P09429 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HMGB1P09429 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC17.77■□□□□ 0.44
HMGB1P09429 AC007191.1-201ENST00000623179 2995 ntBASIC17.77■□□□□ 0.44
HMGB1P09429 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC17.77■□□□□ 0.43
HMGB1P09429 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HMGB1P09429 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
HMGB1P09429 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HMGB1P09429 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.43
HMGB1P09429 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC17.77■□□□□ 0.43
HMGB1P09429 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
HMGB1P09429 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
HMGB1P09429 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB1P09429 SALL4P5-201ENST00000419001 1760 ntBASIC17.76■□□□□ 0.43
HMGB1P09429 AC003102.2-201ENST00000589195 1469 ntBASIC17.76■□□□□ 0.43
HMGB1P09429 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC17.76■□□□□ 0.43
HMGB1P09429 MSTO2P-201ENST00000314835 1709 ntBASIC17.76■□□□□ 0.43
HMGB1P09429 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB1P09429 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB1P09429 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB1P09429 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
HMGB1P09429 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB1P09429 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB1P09429 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB1P09429 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB1P09429 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB1P09429 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB1P09429 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB1P09429 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB1P09429 AC245100.3-201ENST00000441281 285 ntBASIC17.76■□□□□ 0.43
HMGB1P09429 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB1P09429 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC17.76■□□□□ 0.43
HMGB1P09429 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
HMGB1P09429 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB1P09429 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC17.76■□□□□ 0.43
HMGB1P09429 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC17.76■□□□□ 0.43
HMGB1P09429 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC17.76■□□□□ 0.43
HMGB1P09429 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC17.76■□□□□ 0.43
HMGB1P09429 RN7SL48P-201ENST00000579283 293 ntBASIC17.76■□□□□ 0.43
HMGB1P09429 PIGL-212ENST00000581006 554 ntTSL 4 BASIC17.76■□□□□ 0.43
HMGB1P09429 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC17.76■□□□□ 0.43
HMGB1P09429 AC145423.3-201ENST00000615987 467 ntBASIC17.76■□□□□ 0.43
HMGB1P09429 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB1P09429 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC17.76■□□□□ 0.43
HMGB1P09429 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB1P09429 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB1P09429 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC17.76■□□□□ 0.43
HMGB1P09429 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC17.76■□□□□ 0.43
HMGB1P09429 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB1P09429 OR2I1P-209ENST00000641730 5365 ntBASIC17.76■□□□□ 0.43
HMGB1P09429 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB1P09429 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC17.76■□□□□ 0.43
HMGB1P09429 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC17.76■□□□□ 0.43
HMGB1P09429 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
HMGB1P09429 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
HMGB1P09429 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB1P09429 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC17.76■□□□□ 0.43
HMGB1P09429 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGB1P09429 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
HMGB1P09429 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC17.76■□□□□ 0.43
HMGB1P09429 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
HMGB1P09429 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
HMGB1P09429 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGB1P09429 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB1P09429 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB1P09429 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB1P09429 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB1P09429 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HMGB1P09429 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC17.75■□□□□ 0.43
HMGB1P09429 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.75■□□□□ 0.43
HMGB1P09429 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
HMGB1P09429 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGB1P09429 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGB1P09429 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms