Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
COL3A1P02461 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
COL3A1P02461 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
COL3A1P02461 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC19.51■□□□□ 0.71
COL3A1P02461 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
COL3A1P02461 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL3A1P02461 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
COL3A1P02461 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC19.51■□□□□ 0.71
COL3A1P02461 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC19.51■□□□□ 0.71
COL3A1P02461 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL3A1P02461 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL3A1P02461 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
COL3A1P02461 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL3A1P02461 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL3A1P02461 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC19.51■□□□□ 0.71
COL3A1P02461 PDIA3P2-201ENST00000428073 158 ntBASIC19.51■□□□□ 0.71
COL3A1P02461 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL3A1P02461 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
COL3A1P02461 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC19.51■□□□□ 0.71
COL3A1P02461 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC19.51■□□□□ 0.71
COL3A1P02461 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC19.51■□□□□ 0.71
COL3A1P02461 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC19.51■□□□□ 0.71
COL3A1P02461 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC19.51■□□□□ 0.71
COL3A1P02461 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL3A1P02461 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL3A1P02461 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
COL3A1P02461 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL3A1P02461 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL3A1P02461 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL3A1P02461 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC19.51■□□□□ 0.71
COL3A1P02461 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
COL3A1P02461 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
COL3A1P02461 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC19.51■□□□□ 0.71
COL3A1P02461 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC19.5■□□□□ 0.71
COL3A1P02461 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC19.5■□□□□ 0.71
COL3A1P02461 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
COL3A1P02461 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC19.5■□□□□ 0.71
COL3A1P02461 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
COL3A1P02461 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL3A1P02461 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC19.5■□□□□ 0.71
COL3A1P02461 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL3A1P02461 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL3A1P02461 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL3A1P02461 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC19.5■□□□□ 0.71
COL3A1P02461 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC19.5■□□□□ 0.71
COL3A1P02461 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC19.5■□□□□ 0.71
COL3A1P02461 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC19.5■□□□□ 0.71
COL3A1P02461 TPI1-206ENST00000488464 791 ntTSL 5 BASIC19.5■□□□□ 0.71
COL3A1P02461 AC024681.1-201ENST00000521917 487 ntBASIC19.5■□□□□ 0.71
COL3A1P02461 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL3A1P02461 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC19.5■□□□□ 0.71
COL3A1P02461 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC19.5■□□□□ 0.71
COL3A1P02461 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC19.5■□□□□ 0.71
COL3A1P02461 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL3A1P02461 RN7SL774P-201ENST00000577467 290 ntBASIC19.5■□□□□ 0.71
COL3A1P02461 AC092299.1-201ENST00000632679 757 ntBASIC19.5■□□□□ 0.71
COL3A1P02461 AL805961.1-203ENST00000641078 1258 ntBASIC19.5■□□□□ 0.71
COL3A1P02461 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
COL3A1P02461 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC19.5■□□□□ 0.71
COL3A1P02461 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC19.5■□□□□ 0.71
COL3A1P02461 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL3A1P02461 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL3A1P02461 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL3A1P02461 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC19.5■□□□□ 0.71
COL3A1P02461 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC19.5■□□□□ 0.71
COL3A1P02461 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL3A1P02461 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL3A1P02461 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL3A1P02461 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL3A1P02461 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL3A1P02461 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL3A1P02461 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC19.49■□□□□ 0.71
COL3A1P02461 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC19.49■□□□□ 0.71
COL3A1P02461 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC19.49■□□□□ 0.71
COL3A1P02461 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC19.49■□□□□ 0.71
COL3A1P02461 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC19.49■□□□□ 0.71
COL3A1P02461 AC116345.2-201ENST00000512837 523 ntBASIC19.49■□□□□ 0.71
COL3A1P02461 SORD2P-201ENST00000558556 1069 ntBASIC19.49■□□□□ 0.71
COL3A1P02461 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC19.49■□□□□ 0.71
COL3A1P02461 AC091812.3-201ENST00000621362 345 ntBASIC19.49■□□□□ 0.71
COL3A1P02461 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL3A1P02461 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL3A1P02461 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
COL3A1P02461 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
COL3A1P02461 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC19.49■□□□□ 0.71
COL3A1P02461 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL3A1P02461 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL3A1P02461 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL3A1P02461 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL3A1P02461 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL3A1P02461 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL3A1P02461 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC19.48■□□□□ 0.71
COL3A1P02461 JTB-202ENST00000356648 1040 ntTSL 2 BASIC19.48■□□□□ 0.71
COL3A1P02461 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
COL3A1P02461 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC19.48■□□□□ 0.71
COL3A1P02461 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC19.48■□□□□ 0.71
COL3A1P02461 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC19.48■□□□□ 0.71
COL3A1P02461 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
COL3A1P02461 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
COL3A1P02461 AC097724.1-201ENST00000609581 426 ntBASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms