Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC13.3□□□□□ -0.28
RHBDD3Q9Y3P4 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RHBDD3Q9Y3P4 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC13.3□□□□□ -0.28
RHBDD3Q9Y3P4 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
RHBDD3Q9Y3P4 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
RHBDD3Q9Y3P4 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RHBDD3Q9Y3P4 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
RHBDD3Q9Y3P4 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC13.3□□□□□ -0.28
RHBDD3Q9Y3P4 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RHBDD3Q9Y3P4 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
RHBDD3Q9Y3P4 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
RHBDD3Q9Y3P4 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 HSPA7-201ENST00000445535 1927 ntBASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 AC097359.2-201ENST00000604992 2389 ntBASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 UCKL1-AS1-201ENST00000623569 3602 ntBASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 AP001267.2-201ENST00000532619 2086 ntBASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 PKIG-203ENST00000372887 769 ntTSL 3 BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 FES-203ENST00000394302 2133 ntTSL 5 BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 MEIS3P1-201ENST00000495167 958 ntBASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 AC093214.1-201ENST00000511688 1107 ntBASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 AC004840.1-201ENST00000636359 365 ntBASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 AC018529.2-202ENST00000611482 3087 ntBASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 AC087386.2-201ENST00000623212 4637 ntBASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 MPI-203ENST00000535694 1523 ntTSL 2 BASIC13.29□□□□□ -0.28
RHBDD3Q9Y3P4 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 GGCT-205ENST00000409436 954 ntTSL 3 BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 BASP1P1-201ENST00000430708 665 ntBASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 RFPL4AP1-201ENST00000530883 850 ntBASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 DUT-210ENST00000559935 569 ntTSL 3 BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 SRD5A3P1-201ENST00000603021 949 ntBASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 AC000095.1-201ENST00000603208 874 ntBASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 ORC5-208ENST00000626700 344 ntTSL 3 BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 AL645728.2-202ENST00000641679 227 ntBASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 AC113367.3-201ENST00000508316 1912 ntBASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
RHBDD3Q9Y3P4 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms