Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 MGST3-203ENST00000367885 680 ntTSL 2 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 BAATP1-201ENST00000412284 1225 ntBASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 AC011495.1-201ENST00000498085 584 ntBASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 AC068587.3-201ENST00000526613 355 ntBASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 LINC00552-201ENST00000625151 2579 ntBASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 AC134312.5-201ENST00000568031 1313 ntBASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
AP4E1Q9UPM8 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 AC018665.1-201ENST00000622927 1362 ntBASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 AL596325.1-201ENST00000563991 1082 ntBASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 PIGL-212ENST00000581006 554 ntTSL 4 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
AP4E1Q9UPM8 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 AC007292.2-201ENST00000593524 1812 ntBASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
AP4E1Q9UPM8 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms