Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 AC104794.3-201ENST00000566840 1248 ntBASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 BTBD7P1-201ENST00000447253 1453 ntBASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 AL354702.1-201ENST00000442006 1960 ntBASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 AC097376.2-205ENST00000610159 5334 ntBASIC15.69■□□□□ 0.1
ATG4AQ8WYN0 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 AC152010.1-201ENST00000415779 2006 ntBASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 AL138799.1-201ENST00000448213 1675 ntBASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 FAM86LP-201ENST00000478302 853 ntBASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 C1R-201ENST00000535233 2211 ntTSL 2 BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ATG4AQ8WYN0 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.67■□□□□ 0.1
ATG4AQ8WYN0 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms