Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 AC140479.7-201ENST00000636301 2332 ntBASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 AC005562.1-201ENST00000583030 3219 ntBASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 AC118758.2-201ENST00000614242 2813 ntBASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CLIP4Q8N3C7 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 SRC-202ENST00000373558 4304 ntTSL 5 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 AC100757.3-201ENST00000622361 1406 ntBASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 OS9-204ENST00000389146 2091 ntTSL 2 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 AL590560.3-201ENST00000623350 461 ntBASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 RAB34-223ENST00000636154 730 ntTSL 2 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 NIN-202ENST00000324330 4364 ntTSL 5 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 HAL-202ENST00000538703 2637 ntTSL 2 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
CLIP4Q8N3C7 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 AC138969.3-201ENST00000546612 1459 ntBASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 AC138932.2-201ENST00000548268 1459 ntBASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 AC126755.4-201ENST00000549796 1459 ntBASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 FAM86GP-201ENST00000448322 971 ntBASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms