Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
CCNA1P78396 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCNA1P78396 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCNA1P78396 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCNA1P78396 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCNA1P78396 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCNA1P78396 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
CCNA1P78396 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCNA1P78396 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
CCNA1P78396 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCNA1P78396 AL359258.3-201ENST00000622910 2331 ntBASIC17.02■□□□□ 0.32
CCNA1P78396 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC17.02■□□□□ 0.32
CCNA1P78396 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCNA1P78396 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.02■□□□□ 0.32
CCNA1P78396 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCNA1P78396 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCNA1P78396 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCNA1P78396 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
CCNA1P78396 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCNA1P78396 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCNA1P78396 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCNA1P78396 AC104784.1-201ENST00000473096 294 ntBASIC17.02■□□□□ 0.32
CCNA1P78396 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC17.02■□□□□ 0.32
CCNA1P78396 NEU3-205ENST00000531619 582 ntTSL 5 BASIC17.02■□□□□ 0.32
CCNA1P78396 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC17.02■□□□□ 0.32
CCNA1P78396 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCNA1P78396 AC073352.2-201ENST00000609385 439 ntBASIC17.02■□□□□ 0.32
CCNA1P78396 BX088702.1-201ENST00000610784 235 ntBASIC17.02■□□□□ 0.32
CCNA1P78396 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.32
CCNA1P78396 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCNA1P78396 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCNA1P78396 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCNA1P78396 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
CCNA1P78396 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
CCNA1P78396 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC17.02■□□□□ 0.31
CCNA1P78396 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC17.02■□□□□ 0.31
CCNA1P78396 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCNA1P78396 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
CCNA1P78396 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CCNA1P78396 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC17.02■□□□□ 0.31
CCNA1P78396 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CCNA1P78396 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCNA1P78396 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCNA1P78396 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCNA1P78396 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CCNA1P78396 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.02■□□□□ 0.31
CCNA1P78396 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC17.01■□□□□ 0.31
CCNA1P78396 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CCNA1P78396 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.01■□□□□ 0.31
CCNA1P78396 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.01■□□□□ 0.31
CCNA1P78396 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CCNA1P78396 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.01■□□□□ 0.31
CCNA1P78396 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC17.01■□□□□ 0.31
CCNA1P78396 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC17.01■□□□□ 0.31
CCNA1P78396 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC17.01■□□□□ 0.31
CCNA1P78396 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC17.01■□□□□ 0.31
CCNA1P78396 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC17.01■□□□□ 0.31
CCNA1P78396 AC051619.9-201ENST00000623237 597 ntBASIC17.01■□□□□ 0.31
CCNA1P78396 CDK7-214ENST00000626796 358 ntTSL 5 BASIC17.01■□□□□ 0.31
CCNA1P78396 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC17.01■□□□□ 0.31
CCNA1P78396 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
CCNA1P78396 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC17.01■□□□□ 0.31
CCNA1P78396 SALL4P5-201ENST00000419001 1760 ntBASIC17.01■□□□□ 0.31
CCNA1P78396 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.01■□□□□ 0.31
CCNA1P78396 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CCNA1P78396 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.01■□□□□ 0.31
CCNA1P78396 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 AC136759.1-202ENST00000530858 2194 ntBASIC17.01■□□□□ 0.31
CCNA1P78396 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
CCNA1P78396 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CCNA1P78396 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CCNA1P78396 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms