Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC067931.2-201ENST00000623655 2003 ntBASIC19.27■□□□□ 0.67
COL18A1P39060 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
COL18A1P39060 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC19.27■□□□□ 0.67
COL18A1P39060 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL18A1P39060 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL18A1P39060 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL18A1P39060 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC19.27■□□□□ 0.67
COL18A1P39060 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
COL18A1P39060 CSNK1G2P1-201ENST00000442675 955 ntBASIC19.27■□□□□ 0.67
COL18A1P39060 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC19.27■□□□□ 0.67
COL18A1P39060 AC024293.1-201ENST00000467930 498 ntBASIC19.27■□□□□ 0.67
COL18A1P39060 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC19.27■□□□□ 0.67
COL18A1P39060 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.67
COL18A1P39060 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC19.27■□□□□ 0.67
COL18A1P39060 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL18A1P39060 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL18A1P39060 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL18A1P39060 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC19.26■□□□□ 0.67
COL18A1P39060 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC19.26■□□□□ 0.67
COL18A1P39060 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
COL18A1P39060 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL18A1P39060 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
COL18A1P39060 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL18A1P39060 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL18A1P39060 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
COL18A1P39060 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC19.26■□□□□ 0.67
COL18A1P39060 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC19.26■□□□□ 0.67
COL18A1P39060 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
COL18A1P39060 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC19.26■□□□□ 0.67
COL18A1P39060 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC19.26■□□□□ 0.67
COL18A1P39060 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC19.26■□□□□ 0.67
COL18A1P39060 AL118522.1-201ENST00000611368 560 ntBASIC19.26■□□□□ 0.67
COL18A1P39060 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC19.26■□□□□ 0.67
COL18A1P39060 HELLS-212ENST00000630929 400 ntTSL 5 BASIC19.26■□□□□ 0.67
COL18A1P39060 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL18A1P39060 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL18A1P39060 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL18A1P39060 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL18A1P39060 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL18A1P39060 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL18A1P39060 CES3-203ENST00000543856 3178 ntTSL 2 BASIC19.25■□□□□ 0.67
COL18A1P39060 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL18A1P39060 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL18A1P39060 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL18A1P39060 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
COL18A1P39060 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL18A1P39060 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL18A1P39060 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC19.25■□□□□ 0.67
COL18A1P39060 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC19.25■□□□□ 0.67
COL18A1P39060 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC19.25■□□□□ 0.67
COL18A1P39060 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC19.25■□□□□ 0.67
COL18A1P39060 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC19.25■□□□□ 0.67
COL18A1P39060 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL18A1P39060 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL18A1P39060 AL591122.2-201ENST00000624125 1853 ntBASIC19.25■□□□□ 0.67
COL18A1P39060 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL18A1P39060 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL18A1P39060 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC19.25■□□□□ 0.67
COL18A1P39060 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC19.25■□□□□ 0.67
COL18A1P39060 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
COL18A1P39060 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL18A1P39060 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
COL18A1P39060 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC19.25■□□□□ 0.67
COL18A1P39060 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL18A1P39060 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL18A1P39060 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL18A1P39060 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL18A1P39060 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL18A1P39060 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
COL18A1P39060 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC19.24■□□□□ 0.67
COL18A1P39060 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL18A1P39060 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL18A1P39060 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL18A1P39060 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL18A1P39060 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC19.24■□□□□ 0.67
COL18A1P39060 RN7SL564P-201ENST00000496309 250 ntBASIC19.24■□□□□ 0.67
COL18A1P39060 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC19.24■□□□□ 0.67
COL18A1P39060 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC19.24■□□□□ 0.67
COL18A1P39060 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC19.24■□□□□ 0.67
COL18A1P39060 AL591471.1-201ENST00000621855 229 ntBASIC19.24■□□□□ 0.67
COL18A1P39060 AL451007.2-201ENST00000632004 563 ntBASIC19.24■□□□□ 0.67
COL18A1P39060 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC19.24■□□□□ 0.67
COL18A1P39060 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL18A1P39060 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL18A1P39060 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC19.24■□□□□ 0.67
COL18A1P39060 AC006372.4-201ENST00000624122 1543 ntBASIC19.24■□□□□ 0.67
COL18A1P39060 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
COL18A1P39060 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC19.24■□□□□ 0.67
COL18A1P39060 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC19.24■□□□□ 0.67
COL18A1P39060 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
COL18A1P39060 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL18A1P39060 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC19.24■□□□□ 0.67
COL18A1P39060 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL18A1P39060 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL18A1P39060 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
COL18A1P39060 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
COL18A1P39060 HCG27-204ENST00000424675 895 ntTSL 3 BASIC19.24■□□□□ 0.67
COL18A1P39060 AC018638.5-201ENST00000450885 754 ntBASIC19.24■□□□□ 0.67
COL18A1P39060 AL135901.1-201ENST00000451812 333 ntBASIC19.24■□□□□ 0.67
COL18A1P39060 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms