Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
VCANP13611 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VCANP13611 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC15.19■□□□□ 0.02
VCANP13611 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
VCANP13611 SMIM28-201ENST00000573100 855 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
VCANP13611 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
VCANP13611 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC15.19■□□□□ 0.02
VCANP13611 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC15.19■□□□□ 0.02
VCANP13611 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VCANP13611 AL050341.2-201ENST00000567508 1541 ntBASIC15.19■□□□□ 0.02
VCANP13611 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
VCANP13611 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
VCANP13611 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VCANP13611 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.19■□□□□ 0.02
VCANP13611 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC15.19■□□□□ 0.02
VCANP13611 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VCANP13611 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
VCANP13611 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC15.19■□□□□ 0.02
VCANP13611 OR51A9P-201ENST00000422578 911 ntBASIC15.19■□□□□ 0.02
VCANP13611 GNG10P1-201ENST00000452289 199 ntBASIC15.19■□□□□ 0.02
VCANP13611 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC15.19■□□□□ 0.02
VCANP13611 KRT18P37-201ENST00000520711 1282 ntBASIC15.19■□□□□ 0.02
VCANP13611 AP002490.2-201ENST00000524791 560 ntBASIC15.19■□□□□ 0.02
VCANP13611 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
VCANP13611 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
VCANP13611 AC023968.2-201ENST00000560593 1049 ntBASIC15.19■□□□□ 0.02
VCANP13611 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VCANP13611 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
VCANP13611 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC15.19■□□□□ 0.02
VCANP13611 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VCANP13611 AHCYP4-201ENST00000419201 1315 ntBASIC15.18■□□□□ 0.02
VCANP13611 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
VCANP13611 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
VCANP13611 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VCANP13611 GUSBP10-201ENST00000417412 665 ntBASIC15.18■□□□□ 0.02
VCANP13611 AC011676.3-201ENST00000520606 294 ntTSL 5 BASIC15.18■□□□□ 0.02
VCANP13611 PLA2G4C-AS1-203ENST00000601950 454 ntTSL 3 BASIC15.18■□□□□ 0.02
VCANP13611 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VCANP13611 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VCANP13611 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VCANP13611 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VCANP13611 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VCANP13611 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.18■□□□□ 0.02
VCANP13611 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
VCANP13611 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
VCANP13611 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
VCANP13611 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VCANP13611 MBP-201ENST00000354542 575 ntTSL 2 BASIC15.18■□□□□ 0.02
VCANP13611 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VCANP13611 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
VCANP13611 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VCANP13611 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.18■□□□□ 0.02
VCANP13611 BX322534.1-201ENST00000635574 241 ntBASIC15.18■□□□□ 0.02
VCANP13611 AC215524.1-201ENST00000635696 241 ntBASIC15.18■□□□□ 0.02
VCANP13611 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
VCANP13611 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VCANP13611 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VCANP13611 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VCANP13611 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC15.18■□□□□ 0.02
VCANP13611 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
VCANP13611 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
VCANP13611 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VCANP13611 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VCANP13611 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
VCANP13611 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC15.18■□□□□ 0.02
VCANP13611 AC122694.1-201ENST00000510987 563 ntTSL 4 BASIC15.18■□□□□ 0.02
VCANP13611 IGHV1-12-201ENST00000518307 205 ntBASIC15.18■□□□□ 0.02
VCANP13611 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VCANP13611 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC15.18■□□□□ 0.02
VCANP13611 RN7SL440P-201ENST00000577855 343 ntBASIC15.18■□□□□ 0.02
VCANP13611 AC022098.2-201ENST00000590528 518 ntTSL 4 BASIC15.18■□□□□ 0.02
VCANP13611 AC005746.3-201ENST00000614751 393 ntBASIC15.18■□□□□ 0.02
VCANP13611 IL18BP-201ENST00000260049 1354 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
VCANP13611 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VCANP13611 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC15.17■□□□□ 0.02
VCANP13611 FAS-202ENST00000352159 1722 ntTSL 5 BASIC15.17■□□□□ 0.02
VCANP13611 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
VCANP13611 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC15.17■□□□□ 0.02
VCANP13611 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.17■□□□□ 0.02
VCANP13611 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VCANP13611 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
VCANP13611 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VCANP13611 HMGA1P2-201ENST00000430198 324 ntBASIC15.17■□□□□ 0.02
VCANP13611 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC15.17■□□□□ 0.02
VCANP13611 AC106789.1-201ENST00000512927 570 ntTSL 4 BASIC15.17■□□□□ 0.02
VCANP13611 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC15.17■□□□□ 0.02
VCANP13611 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VCANP13611 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
VCANP13611 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC15.17■□□□□ 0.02
VCANP13611 AC018629.1-201ENST00000623381 1736 ntBASIC15.17■□□□□ 0.02
VCANP13611 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VCANP13611 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VCANP13611 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC15.17■□□□□ 0.02
VCANP13611 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC15.17■□□□□ 0.02
VCANP13611 PYY2-201ENST00000315776 282 ntBASIC15.17■□□□□ 0.02
VCANP13611 OR6S1-201ENST00000320704 996 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
VCANP13611 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
VCANP13611 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
VCANP13611 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VCANP13611 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms