Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA1O95477 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA1O95477 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA1O95477 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA1O95477 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA1O95477 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA1O95477 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA1O95477 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA1O95477 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA1O95477 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC12.74□□□□□ -0.37
ABCA1O95477 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA1O95477 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
ABCA1O95477 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
ABCA1O95477 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC12.74□□□□□ -0.37
ABCA1O95477 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA1O95477 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC12.74□□□□□ -0.37
ABCA1O95477 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC12.74□□□□□ -0.37
ABCA1O95477 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
ABCA1O95477 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC12.74□□□□□ -0.37
ABCA1O95477 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA1O95477 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA1O95477 LINC02447-202ENST00000501888 2146 ntBASIC12.74□□□□□ -0.37
ABCA1O95477 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC12.74□□□□□ -0.37
ABCA1O95477 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC12.74□□□□□ -0.37
ABCA1O95477 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA1O95477 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC12.74□□□□□ -0.37
ABCA1O95477 SOGA1-201ENST00000237536 14371 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
ABCA1O95477 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA1O95477 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC12.74□□□□□ -0.37
ABCA1O95477 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA1O95477 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA1O95477 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA1O95477 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
ABCA1O95477 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
ABCA1O95477 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA1O95477 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC12.73□□□□□ -0.37
ABCA1O95477 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA1O95477 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC12.73□□□□□ -0.37
ABCA1O95477 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA1O95477 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA1O95477 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC12.73□□□□□ -0.37
ABCA1O95477 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC12.73□□□□□ -0.37
ABCA1O95477 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
ABCA1O95477 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
ABCA1O95477 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
ABCA1O95477 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC12.73□□□□□ -0.37
ABCA1O95477 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
ABCA1O95477 AC138649.2-201ENST00000615886 705 ntBASIC12.73□□□□□ -0.37
ABCA1O95477 ETV2-208ENST00000621247 941 ntTSL 5 BASIC12.73□□□□□ -0.37
ABCA1O95477 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA1O95477 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA1O95477 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA1O95477 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA1O95477 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
ABCA1O95477 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC12.73□□□□□ -0.37
ABCA1O95477 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA1O95477 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA1O95477 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC12.73□□□□□ -0.37
ABCA1O95477 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC12.73□□□□□ -0.37
ABCA1O95477 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
ABCA1O95477 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA1O95477 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA1O95477 AC073347.1-201ENST00000421633 2643 ntBASIC12.73□□□□□ -0.37
ABCA1O95477 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
ABCA1O95477 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC12.73□□□□□ -0.37
ABCA1O95477 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA1O95477 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC12.73□□□□□ -0.37
ABCA1O95477 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
ABCA1O95477 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC12.73□□□□□ -0.37
ABCA1O95477 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA1O95477 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA1O95477 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA1O95477 GAPDHP40-201ENST00000505218 1006 ntBASIC12.73□□□□□ -0.37
ABCA1O95477 ECM1P1-201ENST00000604092 1279 ntBASIC12.73□□□□□ -0.37
ABCA1O95477 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC12.73□□□□□ -0.37
ABCA1O95477 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC12.73□□□□□ -0.37
ABCA1O95477 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA1O95477 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC12.73□□□□□ -0.37
ABCA1O95477 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
ABCA1O95477 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
ABCA1O95477 AL354989.2-201ENST00000435838 1540 ntBASIC12.73□□□□□ -0.37
ABCA1O95477 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA1O95477 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA1O95477 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA1O95477 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
ABCA1O95477 AL023775.1-201ENST00000454907 1746 ntBASIC12.73□□□□□ -0.37
ABCA1O95477 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA1O95477 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
ABCA1O95477 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA1O95477 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA1O95477 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA1O95477 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA1O95477 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC12.72□□□□□ -0.37
ABCA1O95477 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC12.72□□□□□ -0.37
ABCA1O95477 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
ABCA1O95477 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC12.72□□□□□ -0.37
ABCA1O95477 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC12.72□□□□□ -0.37
ABCA1O95477 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA1O95477 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
ABCA1O95477 MIR769-201ENST00000390225 118 ntBASIC12.72□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms