Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
SHOX2O60902 AC005593.1-201ENST00000624894 515 ntBASIC15.13■□□□□ 0.01
SHOX2O60902 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC15.13■□□□□ 0.01
SHOX2O60902 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC15.13■□□□□ 0.01
SHOX2O60902 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHOX2O60902 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHOX2O60902 SPTBN2-210ENST00000611817 2890 ntTSL 2 BASIC15.13■□□□□ 0.01
SHOX2O60902 OSBPL9-201ENST00000361556 2721 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SHOX2O60902 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.13■□□□□ 0.01
SHOX2O60902 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC15.13■□□□□ 0.01
SHOX2O60902 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
SHOX2O60902 MARK2-205ENST00000408948 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHOX2O60902 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SHOX2O60902 AC244197.3-201ENST00000422081 2635 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
SHOX2O60902 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC15.13■□□□□ 0.01
SHOX2O60902 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC15.12■□□□□ 0.01
SHOX2O60902 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
SHOX2O60902 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
SHOX2O60902 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
SHOX2O60902 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 NF1-204ENST00000431387 2889 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 SYNPR-209ENST00000478300 2709 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.12■□□□□ 0.01
SHOX2O60902 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 AL162431.2-201ENST00000358073 2424 ntTSL 2 BASIC15.12■□□□□ 0.01
SHOX2O60902 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC15.12■□□□□ 0.01
SHOX2O60902 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
SHOX2O60902 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
SHOX2O60902 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC15.12■□□□□ 0.01
SHOX2O60902 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC15.12■□□□□ 0.01
SHOX2O60902 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC15.12■□□□□ 0.01
SHOX2O60902 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
SHOX2O60902 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC15.12■□□□□ 0.01
SHOX2O60902 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC15.12■□□□□ 0.01
SHOX2O60902 NCSTN-202ENST00000368063 3031 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
SHOX2O60902 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 AC024075.2-201ENST00000598112 1473 ntBASIC15.12■□□□□ 0.01
SHOX2O60902 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 PRKN-205ENST00000366897 2877 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 GOLGA2P5-201ENST00000266746 2395 ntBASIC15.12■□□□□ 0.01
SHOX2O60902 DLX4-206ENST00000611342 1662 ntBASIC15.12■□□□□ 0.01
SHOX2O60902 AL031719.1-201ENST00000623365 2587 ntBASIC15.12■□□□□ 0.01
SHOX2O60902 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC15.12■□□□□ 0.01
SHOX2O60902 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 TGM1-201ENST00000206765 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
SHOX2O60902 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SHOX2O60902 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.12■□□□□ 0.01
SHOX2O60902 RAB37-204ENST00000392613 2617 ntAPPRIS ALT1 TSL 2 BASIC15.12■□□□□ 0.01
SHOX2O60902 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
SHOX2O60902 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
SHOX2O60902 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC15.11■□□□□ 0.01
SHOX2O60902 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHOX2O60902 AOC1-204ENST00000467291 2857 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
SHOX2O60902 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHOX2O60902 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHOX2O60902 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
SHOX2O60902 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SHOX2O60902 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.11■□□□□ 0.01
SHOX2O60902 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SHOX2O60902 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHOX2O60902 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.11■□□□□ 0.01
SHOX2O60902 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHOX2O60902 HNRNPUL1-207ENST00000595018 2794 ntTSL 2 BASIC15.11■□□□□ 0.01
SHOX2O60902 ALPP-201ENST00000392027 2971 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHOX2O60902 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC15.11■□□□□ 0.01
SHOX2O60902 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHOX2O60902 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHOX2O60902 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC15.11■□□□□ 0.01
SHOX2O60902 FUT6-205ENST00000527106 2211 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHOX2O60902 INSC-207ENST00000528567 2237 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SHOX2O60902 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
SHOX2O60902 PTPN5-205ENST00000477854 2826 ntTSL 5 BASIC15.11■□□□□ 0.01
SHOX2O60902 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHOX2O60902 IL21R-204ENST00000564089 3009 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
SHOX2O60902 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHOX2O60902 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SHOX2O60902 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms