Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TMX2-CTNND1H3BSU7 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TMX2-CTNND1H3BSU7 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC14.93□□□□□ -0.02
TMX2-CTNND1H3BSU7 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
TMX2-CTNND1H3BSU7 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 TMBIM7P-203ENST00000641617 1718 ntBASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 AC011477.6-201ENST00000604980 1927 ntBASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 ING5-213ENST00000636051 4199 ntTSL 5 BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 GUK1-206ENST00000366723 845 ntTSL 5 BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 AC106760.1-201ENST00000508690 800 ntBASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 AC025279.2-201ENST00000569730 653 ntBASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 AC244093.1-201ENST00000610837 814 ntBASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 AC091271.1-201ENST00000611877 1162 ntBASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 LINC01101-201ENST00000622953 1884 ntBASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 CNTNAP3P2-201ENST00000617175 3861 ntBASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TMX2-CTNND1H3BSU7 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 ABR-228ENST00000574437 3196 ntTSL 5 BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 CELP-203ENST00000624767 2414 ntTSL 5 BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 TPO-206ENST00000382269 1155 ntTSL 5 BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 RAC2-202ENST00000401529 569 ntTSL 4 BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 BCYRN1-201ENST00000418539 200 ntBASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 AC026954.1-201ENST00000429771 1293 ntBASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 AC245100.3-201ENST00000441281 285 ntBASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 AC108725.1-201ENST00000495472 409 ntBASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 USB1-203ENST00000539737 1212 ntTSL 2 BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC14.91□□□□□ -0.02
TMX2-CTNND1H3BSU7 AC107373.2-201ENST00000607735 490 ntBASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms