Protein–RNA interactions for Protein: F8WFD2

NPIPA3, Nuclear pore complex-interacting protein family member A3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA3F8WFD2 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 AL590640.2-201ENST00000457038 527 ntBASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 AGER-214ENST00000538695 487 ntTSL 2 BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 AHCYP2-201ENST00000430630 1300 ntBASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NPIPA3F8WFD2 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 AC006001.1-201ENST00000325130 474 ntBASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 MPV17-205ENST00000402310 906 ntTSL 5 BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 ACTBP8-201ENST00000403258 1108 ntBASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 MIR1202-201ENST00000408529 83 ntBASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 OLR1-203ENST00000432556 950 ntTSL 2 BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 AC108725.1-201ENST00000495472 409 ntBASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 RNA5SP486-201ENST00000515961 83 ntBASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 DUX4L45-201ENST00000566406 1057 ntBASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 AC091271.1-201ENST00000611877 1162 ntBASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 AC023157.3-201ENST00000619086 2088 ntBASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
NPIPA3F8WFD2 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 247.6 ms