Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 SLC35F2-201ENST00000375682 1076 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 SNORA57-201ENST00000383870 149 ntBASIC11.42□□□□□ -0.58
COL6A5A8TX70 DLGAP4-AS1-203ENST00000439595 1207 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 RN7SL288P-201ENST00000490496 291 ntBASIC11.42□□□□□ -0.58
COL6A5A8TX70 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 BLOC1S1-203ENST00000548925 571 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 INO80E-209ENST00000567254 625 ntTSL 2 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 SULT1A2-202ENST00000395630 1322 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 RPL4P6-201ENST00000438116 1304 ntBASIC11.42□□□□□ -0.58
COL6A5A8TX70 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 PRAL-201ENST00000624952 3286 ntBASIC11.42□□□□□ -0.58
COL6A5A8TX70 IL18BP-201ENST00000260049 1354 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC11.42□□□□□ -0.58
COL6A5A8TX70 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
COL6A5A8TX70 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 FDPSP7-201ENST00000429043 1054 ntBASIC11.41□□□□□ -0.58
COL6A5A8TX70 ISL1-203ENST00000511384 981 ntTSL 5 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 C1orf198-207ENST00000523410 1041 ntAPPRIS ALT2 TSL 2 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 AC091588.3-201ENST00000583442 770 ntTSL 3 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 CHD2-218ENST00000629346 1249 ntTSL 5 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 GPX3-202ENST00000517973 612 ntTSL 3 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 AC022001.3-201ENST00000606330 596 ntBASIC11.41□□□□□ -0.58
COL6A5A8TX70 AL513478.2-202ENST00000621949 835 ntTSL 3 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 Z82244.2-201ENST00000632196 448 ntBASIC11.41□□□□□ -0.58
COL6A5A8TX70 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC11.41□□□□□ -0.58
COL6A5A8TX70 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
COL6A5A8TX70 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms