Protein–RNA interactions for Protein: R4GMX3

COMMD3-BMI1, COMMD3-BMI1 readthrough, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-BMI1R4GMX3 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COMMD3-BMI1R4GMX3 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
COMMD3-BMI1R4GMX3 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
COMMD3-BMI1R4GMX3 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COMMD3-BMI1R4GMX3 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.47■■□□□ 1.03
COMMD3-BMI1R4GMX3 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COMMD3-BMI1R4GMX3 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
COMMD3-BMI1R4GMX3 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC21.47■■□□□ 1.03
COMMD3-BMI1R4GMX3 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
COMMD3-BMI1R4GMX3 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.46■■□□□ 1.03
COMMD3-BMI1R4GMX3 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COMMD3-BMI1R4GMX3 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COMMD3-BMI1R4GMX3 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC21.46■■□□□ 1.03
COMMD3-BMI1R4GMX3 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
COMMD3-BMI1R4GMX3 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
COMMD3-BMI1R4GMX3 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
COMMD3-BMI1R4GMX3 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
COMMD3-BMI1R4GMX3 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COMMD3-BMI1R4GMX3 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
COMMD3-BMI1R4GMX3 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COMMD3-BMI1R4GMX3 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
COMMD3-BMI1R4GMX3 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
COMMD3-BMI1R4GMX3 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.45■■□□□ 1.02
COMMD3-BMI1R4GMX3 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COMMD3-BMI1R4GMX3 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
COMMD3-BMI1R4GMX3 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COMMD3-BMI1R4GMX3 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COMMD3-BMI1R4GMX3 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
COMMD3-BMI1R4GMX3 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
COMMD3-BMI1R4GMX3 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COMMD3-BMI1R4GMX3 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
COMMD3-BMI1R4GMX3 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
COMMD3-BMI1R4GMX3 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COMMD3-BMI1R4GMX3 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
COMMD3-BMI1R4GMX3 AC126177.7-201ENST00000547904 679 ntBASIC21.44■■□□□ 1.02
COMMD3-BMI1R4GMX3 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
COMMD3-BMI1R4GMX3 AC016575.1-201ENST00000607026 382 ntBASIC21.44■■□□□ 1.02
COMMD3-BMI1R4GMX3 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.44■■□□□ 1.02
COMMD3-BMI1R4GMX3 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.44■■□□□ 1.02
COMMD3-BMI1R4GMX3 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COMMD3-BMI1R4GMX3 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
COMMD3-BMI1R4GMX3 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.44■■□□□ 1.02
COMMD3-BMI1R4GMX3 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
COMMD3-BMI1R4GMX3 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COMMD3-BMI1R4GMX3 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COMMD3-BMI1R4GMX3 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
COMMD3-BMI1R4GMX3 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
COMMD3-BMI1R4GMX3 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
COMMD3-BMI1R4GMX3 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC21.43■■□□□ 1.02
COMMD3-BMI1R4GMX3 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COMMD3-BMI1R4GMX3 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC21.43■■□□□ 1.02
COMMD3-BMI1R4GMX3 METRNL-202ENST00000570778 967 ntTSL 5 BASIC21.43■■□□□ 1.02
COMMD3-BMI1R4GMX3 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COMMD3-BMI1R4GMX3 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
COMMD3-BMI1R4GMX3 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COMMD3-BMI1R4GMX3 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
COMMD3-BMI1R4GMX3 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COMMD3-BMI1R4GMX3 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
COMMD3-BMI1R4GMX3 RNF165-205ENST00000588679 2904 ntBASIC21.42■■□□□ 1.02
COMMD3-BMI1R4GMX3 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COMMD3-BMI1R4GMX3 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COMMD3-BMI1R4GMX3 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COMMD3-BMI1R4GMX3 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.42■■□□□ 1.02
COMMD3-BMI1R4GMX3 PKD1P6-201ENST00000343738 4769 ntBASIC21.42■■□□□ 1.02
COMMD3-BMI1R4GMX3 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.42■■□□□ 1.02
COMMD3-BMI1R4GMX3 ECEL1P1-201ENST00000373592 1742 ntBASIC21.42■■□□□ 1.02
COMMD3-BMI1R4GMX3 GUSBP5-202ENST00000510805 1989 ntBASIC21.42■■□□□ 1.02
COMMD3-BMI1R4GMX3 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
COMMD3-BMI1R4GMX3 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.42■■□□□ 1.02
COMMD3-BMI1R4GMX3 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
COMMD3-BMI1R4GMX3 SLC6A10P-202ENST00000431994 2058 ntBASIC21.41■■□□□ 1.02
COMMD3-BMI1R4GMX3 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COMMD3-BMI1R4GMX3 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21.41■■□□□ 1.02
COMMD3-BMI1R4GMX3 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
COMMD3-BMI1R4GMX3 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
COMMD3-BMI1R4GMX3 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
COMMD3-BMI1R4GMX3 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
COMMD3-BMI1R4GMX3 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
COMMD3-BMI1R4GMX3 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COMMD3-BMI1R4GMX3 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
COMMD3-BMI1R4GMX3 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.4■■□□□ 1.02
COMMD3-BMI1R4GMX3 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COMMD3-BMI1R4GMX3 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
COMMD3-BMI1R4GMX3 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.4■■□□□ 1.02
COMMD3-BMI1R4GMX3 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COMMD3-BMI1R4GMX3 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
COMMD3-BMI1R4GMX3 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
COMMD3-BMI1R4GMX3 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.4■■□□□ 1.02
COMMD3-BMI1R4GMX3 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
COMMD3-BMI1R4GMX3 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC21.4■■□□□ 1.02
COMMD3-BMI1R4GMX3 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COMMD3-BMI1R4GMX3 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.39■■□□□ 1.02
COMMD3-BMI1R4GMX3 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
COMMD3-BMI1R4GMX3 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
COMMD3-BMI1R4GMX3 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
COMMD3-BMI1R4GMX3 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.01
COMMD3-BMI1R4GMX3 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COMMD3-BMI1R4GMX3 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
COMMD3-BMI1R4GMX3 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COMMD3-BMI1R4GMX3 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms