Protein–RNA interactions for Protein: Q9Y5I1

PCDHA11, Protocadherin alpha-11, humanhuman

Predictions only

Length 949 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA11Q9Y5I1 SERBP1P1-201ENST00000396021 1160 ntBASIC25.12■■□□□ 1.61
PCDHA11Q9Y5I1 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
PCDHA11Q9Y5I1 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC25.12■■□□□ 1.61
PCDHA11Q9Y5I1 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PCDHA11Q9Y5I1 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PCDHA11Q9Y5I1 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PCDHA11Q9Y5I1 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC25.11■■□□□ 1.61
PCDHA11Q9Y5I1 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
PCDHA11Q9Y5I1 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PCDHA11Q9Y5I1 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC25.1■■□□□ 1.61
PCDHA11Q9Y5I1 JTB-203ENST00000368589 1216 ntTSL 2 BASIC25.1■■□□□ 1.61
PCDHA11Q9Y5I1 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC25.1■■□□□ 1.61
PCDHA11Q9Y5I1 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
PCDHA11Q9Y5I1 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC25.09■■□□□ 1.61
PCDHA11Q9Y5I1 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC25.09■■□□□ 1.61
PCDHA11Q9Y5I1 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC25.09■■□□□ 1.61
PCDHA11Q9Y5I1 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC25.09■■□□□ 1.61
PCDHA11Q9Y5I1 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
PCDHA11Q9Y5I1 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
PCDHA11Q9Y5I1 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC25.09■■□□□ 1.61
PCDHA11Q9Y5I1 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
PCDHA11Q9Y5I1 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC25.09■■□□□ 1.61
PCDHA11Q9Y5I1 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC25.08■■□□□ 1.61
PCDHA11Q9Y5I1 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
PCDHA11Q9Y5I1 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC25.08■■□□□ 1.61
PCDHA11Q9Y5I1 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC25.08■■□□□ 1.61
PCDHA11Q9Y5I1 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC25.08■■□□□ 1.61
PCDHA11Q9Y5I1 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC25.08■■□□□ 1.61
PCDHA11Q9Y5I1 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
PCDHA11Q9Y5I1 AC008764.7-201ENST00000593779 1081 ntBASIC25.08■■□□□ 1.61
PCDHA11Q9Y5I1 AL138724.1-201ENST00000606771 1088 ntBASIC25.08■■□□□ 1.61
PCDHA11Q9Y5I1 AC011298.3-201ENST00000615796 283 ntBASIC25.08■■□□□ 1.61
PCDHA11Q9Y5I1 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
PCDHA11Q9Y5I1 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
PCDHA11Q9Y5I1 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC25.07■■□□□ 1.6
PCDHA11Q9Y5I1 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC25.07■■□□□ 1.6
PCDHA11Q9Y5I1 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC25.07■■□□□ 1.6
PCDHA11Q9Y5I1 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC25.07■■□□□ 1.6
PCDHA11Q9Y5I1 RHOF-204ENST00000537265 699 ntTSL 2 BASIC25.07■■□□□ 1.6
PCDHA11Q9Y5I1 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC25.07■■□□□ 1.6
PCDHA11Q9Y5I1 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC25.07■■□□□ 1.6
PCDHA11Q9Y5I1 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PCDHA11Q9Y5I1 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
PCDHA11Q9Y5I1 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PCDHA11Q9Y5I1 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC25.06■■□□□ 1.6
PCDHA11Q9Y5I1 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PCDHA11Q9Y5I1 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC25.06■■□□□ 1.6
PCDHA11Q9Y5I1 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PCDHA11Q9Y5I1 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC25.06■■□□□ 1.6
PCDHA11Q9Y5I1 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC25.06■■□□□ 1.6
PCDHA11Q9Y5I1 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PCDHA11Q9Y5I1 AC099791.1-201ENST00000416440 715 ntBASIC25.05■■□□□ 1.6
PCDHA11Q9Y5I1 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
PCDHA11Q9Y5I1 PTCHD3P2-201ENST00000424937 1205 ntBASIC25.05■■□□□ 1.6
PCDHA11Q9Y5I1 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC25.05■■□□□ 1.6
PCDHA11Q9Y5I1 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
PCDHA11Q9Y5I1 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC25.05■■□□□ 1.6
PCDHA11Q9Y5I1 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC25.05■■□□□ 1.6
PCDHA11Q9Y5I1 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
PCDHA11Q9Y5I1 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
PCDHA11Q9Y5I1 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC25.05■■□□□ 1.6
PCDHA11Q9Y5I1 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
PCDHA11Q9Y5I1 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
PCDHA11Q9Y5I1 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
PCDHA11Q9Y5I1 AC145676.1-201ENST00000514988 2004 ntBASIC25.04■■□□□ 1.6
PCDHA11Q9Y5I1 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC25.04■■□□□ 1.6
PCDHA11Q9Y5I1 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
PCDHA11Q9Y5I1 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC25.04■■□□□ 1.6
PCDHA11Q9Y5I1 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC25.04■■□□□ 1.6
PCDHA11Q9Y5I1 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
PCDHA11Q9Y5I1 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC25.03■■□□□ 1.6
PCDHA11Q9Y5I1 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
PCDHA11Q9Y5I1 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC25.03■■□□□ 1.6
PCDHA11Q9Y5I1 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC25.03■■□□□ 1.6
PCDHA11Q9Y5I1 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
PCDHA11Q9Y5I1 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC25.03■■□□□ 1.6
PCDHA11Q9Y5I1 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
PCDHA11Q9Y5I1 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
PCDHA11Q9Y5I1 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC25.02■■□□□ 1.6
PCDHA11Q9Y5I1 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC25.02■■□□□ 1.6
PCDHA11Q9Y5I1 AC099791.2-201ENST00000605725 427 ntBASIC25.02■■□□□ 1.6
PCDHA11Q9Y5I1 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
PCDHA11Q9Y5I1 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC25.02■■□□□ 1.6
PCDHA11Q9Y5I1 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC25.02■■□□□ 1.6
PCDHA11Q9Y5I1 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC25.01■■□□□ 1.59
PCDHA11Q9Y5I1 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC25.01■■□□□ 1.59
PCDHA11Q9Y5I1 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
PCDHA11Q9Y5I1 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC25.01■■□□□ 1.59
PCDHA11Q9Y5I1 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
PCDHA11Q9Y5I1 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
PCDHA11Q9Y5I1 AC034268.1-201ENST00000441047 882 ntBASIC25.01■■□□□ 1.59
PCDHA11Q9Y5I1 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC25.01■■□□□ 1.59
PCDHA11Q9Y5I1 AC022517.1-201ENST00000592429 346 ntBASIC25.01■■□□□ 1.59
PCDHA11Q9Y5I1 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC25.01■■□□□ 1.59
PCDHA11Q9Y5I1 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
PCDHA11Q9Y5I1 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
PCDHA11Q9Y5I1 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC25■■□□□ 1.59
PCDHA11Q9Y5I1 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC25■■□□□ 1.59
PCDHA11Q9Y5I1 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC25■■□□□ 1.59
PCDHA11Q9Y5I1 IKBKGP1-201ENST00000612193 1073 ntBASIC25■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms