Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 AC129492.7-201ENST00000622992 756 ntBASIC24.08■■□□□ 1.45
PCDHA3Q9Y5H8 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
PCDHA3Q9Y5H8 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
PCDHA3Q9Y5H8 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC24.08■■□□□ 1.45
PCDHA3Q9Y5H8 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC24.08■■□□□ 1.45
PCDHA3Q9Y5H8 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC24.08■■□□□ 1.45
PCDHA3Q9Y5H8 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC24.08■■□□□ 1.44
PCDHA3Q9Y5H8 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC24.08■■□□□ 1.44
PCDHA3Q9Y5H8 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PCDHA3Q9Y5H8 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PCDHA3Q9Y5H8 HSD17B1P1-201ENST00000590052 955 ntBASIC24.07■■□□□ 1.44
PCDHA3Q9Y5H8 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
PCDHA3Q9Y5H8 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC24.06■■□□□ 1.44
PCDHA3Q9Y5H8 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC24.06■■□□□ 1.44
PCDHA3Q9Y5H8 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC24.06■■□□□ 1.44
PCDHA3Q9Y5H8 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
PCDHA3Q9Y5H8 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC24.06■■□□□ 1.44
PCDHA3Q9Y5H8 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC24.06■■□□□ 1.44
PCDHA3Q9Y5H8 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC24.06■■□□□ 1.44
PCDHA3Q9Y5H8 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
PCDHA3Q9Y5H8 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC24.06■■□□□ 1.44
PCDHA3Q9Y5H8 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
PCDHA3Q9Y5H8 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC24.06■■□□□ 1.44
PCDHA3Q9Y5H8 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC24.06■■□□□ 1.44
PCDHA3Q9Y5H8 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
PCDHA3Q9Y5H8 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC24.06■■□□□ 1.44
PCDHA3Q9Y5H8 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
PCDHA3Q9Y5H8 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC24.05■■□□□ 1.44
PCDHA3Q9Y5H8 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC24.05■■□□□ 1.44
PCDHA3Q9Y5H8 EI24-213ENST00000618552 1747 ntTSL 5 BASIC24.05■■□□□ 1.44
PCDHA3Q9Y5H8 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC24.05■■□□□ 1.44
PCDHA3Q9Y5H8 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
PCDHA3Q9Y5H8 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHA3Q9Y5H8 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHA3Q9Y5H8 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHA3Q9Y5H8 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC24.04■■□□□ 1.44
PCDHA3Q9Y5H8 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHA3Q9Y5H8 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHA3Q9Y5H8 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
PCDHA3Q9Y5H8 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC24.03■■□□□ 1.44
PCDHA3Q9Y5H8 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PCDHA3Q9Y5H8 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
PCDHA3Q9Y5H8 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC24.03■■□□□ 1.44
PCDHA3Q9Y5H8 KRT18P60-201ENST00000312876 1297 ntBASIC24.03■■□□□ 1.44
PCDHA3Q9Y5H8 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
PCDHA3Q9Y5H8 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC24.03■■□□□ 1.44
PCDHA3Q9Y5H8 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC24.02■■□□□ 1.44
PCDHA3Q9Y5H8 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC24.02■■□□□ 1.44
PCDHA3Q9Y5H8 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
PCDHA3Q9Y5H8 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
PCDHA3Q9Y5H8 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC24.02■■□□□ 1.44
PCDHA3Q9Y5H8 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
PCDHA3Q9Y5H8 C9orf163-202ENST00000624034 2573 ntBASIC24.01■■□□□ 1.43
PCDHA3Q9Y5H8 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PCDHA3Q9Y5H8 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC24.01■■□□□ 1.43
PCDHA3Q9Y5H8 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
PCDHA3Q9Y5H8 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC24.01■■□□□ 1.43
PCDHA3Q9Y5H8 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
PCDHA3Q9Y5H8 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PCDHA3Q9Y5H8 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC24.01■■□□□ 1.43
PCDHA3Q9Y5H8 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC24■■□□□ 1.43
PCDHA3Q9Y5H8 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC24■■□□□ 1.43
PCDHA3Q9Y5H8 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC24■■□□□ 1.43
PCDHA3Q9Y5H8 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC24■■□□□ 1.43
PCDHA3Q9Y5H8 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
PCDHA3Q9Y5H8 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
PCDHA3Q9Y5H8 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC23.99■■□□□ 1.43
PCDHA3Q9Y5H8 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC23.99■■□□□ 1.43
PCDHA3Q9Y5H8 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC23.98■■□□□ 1.43
PCDHA3Q9Y5H8 ANOS2P-203ENST00000472227 1816 ntBASIC23.98■■□□□ 1.43
PCDHA3Q9Y5H8 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC23.98■■□□□ 1.43
PCDHA3Q9Y5H8 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
PCDHA3Q9Y5H8 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
PCDHA3Q9Y5H8 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC23.98■■□□□ 1.43
PCDHA3Q9Y5H8 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
PCDHA3Q9Y5H8 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
PCDHA3Q9Y5H8 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
PCDHA3Q9Y5H8 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC23.98■■□□□ 1.43
PCDHA3Q9Y5H8 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
PCDHA3Q9Y5H8 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
PCDHA3Q9Y5H8 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
PCDHA3Q9Y5H8 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC23.98■■□□□ 1.43
PCDHA3Q9Y5H8 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
PCDHA3Q9Y5H8 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
PCDHA3Q9Y5H8 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC23.97■■□□□ 1.43
PCDHA3Q9Y5H8 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC23.97■■□□□ 1.43
PCDHA3Q9Y5H8 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
PCDHA3Q9Y5H8 AL022069.1-201ENST00000568025 1636 ntBASIC23.97■■□□□ 1.43
PCDHA3Q9Y5H8 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
PCDHA3Q9Y5H8 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
PCDHA3Q9Y5H8 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
PCDHA3Q9Y5H8 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
PCDHA3Q9Y5H8 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
PCDHA3Q9Y5H8 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC23.96■■□□□ 1.43
PCDHA3Q9Y5H8 AC019171.1-201ENST00000601251 1056 ntBASIC23.96■■□□□ 1.43
PCDHA3Q9Y5H8 AC011551.1-201ENST00000614101 683 ntBASIC23.96■■□□□ 1.43
PCDHA3Q9Y5H8 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
PCDHA3Q9Y5H8 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
PCDHA3Q9Y5H8 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
PCDHA3Q9Y5H8 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms