Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CLCF1Q9UBD9 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.51■□□□□ 0.87
CLCF1Q9UBD9 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLCF1Q9UBD9 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLCF1Q9UBD9 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLCF1Q9UBD9 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CLCF1Q9UBD9 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLCF1Q9UBD9 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CLCF1Q9UBD9 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CLCF1Q9UBD9 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CLCF1Q9UBD9 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
CLCF1Q9UBD9 AC022211.4-201ENST00000625094 2161 ntBASIC20.51■□□□□ 0.87
CLCF1Q9UBD9 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLCF1Q9UBD9 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC20.5■□□□□ 0.87
CLCF1Q9UBD9 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CLCF1Q9UBD9 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.5■□□□□ 0.87
CLCF1Q9UBD9 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CLCF1Q9UBD9 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.5■□□□□ 0.87
CLCF1Q9UBD9 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CLCF1Q9UBD9 AC005703.6-201ENST00000623265 1329 ntBASIC20.5■□□□□ 0.87
CLCF1Q9UBD9 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CLCF1Q9UBD9 HLA-L-211ENST00000482052 1765 ntBASIC20.49■□□□□ 0.87
CLCF1Q9UBD9 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
CLCF1Q9UBD9 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CLCF1Q9UBD9 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.49■□□□□ 0.87
CLCF1Q9UBD9 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLCF1Q9UBD9 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLCF1Q9UBD9 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLCF1Q9UBD9 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLCF1Q9UBD9 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CLCF1Q9UBD9 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CLCF1Q9UBD9 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.48■□□□□ 0.87
CLCF1Q9UBD9 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.48■□□□□ 0.87
CLCF1Q9UBD9 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLCF1Q9UBD9 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLCF1Q9UBD9 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC20.48■□□□□ 0.87
CLCF1Q9UBD9 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLCF1Q9UBD9 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLCF1Q9UBD9 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLCF1Q9UBD9 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.47■□□□□ 0.87
CLCF1Q9UBD9 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CLCF1Q9UBD9 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CLCF1Q9UBD9 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.47■□□□□ 0.87
CLCF1Q9UBD9 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLCF1Q9UBD9 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLCF1Q9UBD9 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLCF1Q9UBD9 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CLCF1Q9UBD9 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLCF1Q9UBD9 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLCF1Q9UBD9 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLCF1Q9UBD9 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLCF1Q9UBD9 AL161729.1-201ENST00000604104 1402 ntBASIC20.46■□□□□ 0.87
CLCF1Q9UBD9 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CLCF1Q9UBD9 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLCF1Q9UBD9 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CLCF1Q9UBD9 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.46■□□□□ 0.87
CLCF1Q9UBD9 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLCF1Q9UBD9 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLCF1Q9UBD9 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.46■□□□□ 0.87
CLCF1Q9UBD9 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CLCF1Q9UBD9 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLCF1Q9UBD9 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLCF1Q9UBD9 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLCF1Q9UBD9 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLCF1Q9UBD9 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLCF1Q9UBD9 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLCF1Q9UBD9 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CLCF1Q9UBD9 AP003733.4-201ENST00000623785 1697 ntBASIC20.45■□□□□ 0.86
CLCF1Q9UBD9 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC20.44■□□□□ 0.86
CLCF1Q9UBD9 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
CLCF1Q9UBD9 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.44■□□□□ 0.86
CLCF1Q9UBD9 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.44■□□□□ 0.86
CLCF1Q9UBD9 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.44■□□□□ 0.86
CLCF1Q9UBD9 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.44■□□□□ 0.86
CLCF1Q9UBD9 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLCF1Q9UBD9 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.44■□□□□ 0.86
CLCF1Q9UBD9 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLCF1Q9UBD9 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
CLCF1Q9UBD9 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLCF1Q9UBD9 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLCF1Q9UBD9 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLCF1Q9UBD9 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.43■□□□□ 0.86
CLCF1Q9UBD9 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CLCF1Q9UBD9 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.42■□□□□ 0.86
CLCF1Q9UBD9 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CLCF1Q9UBD9 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLCF1Q9UBD9 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.42■□□□□ 0.86
CLCF1Q9UBD9 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.42■□□□□ 0.86
CLCF1Q9UBD9 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.42■□□□□ 0.86
CLCF1Q9UBD9 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLCF1Q9UBD9 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC20.42■□□□□ 0.86
CLCF1Q9UBD9 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLCF1Q9UBD9 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC20.42■□□□□ 0.86
CLCF1Q9UBD9 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLCF1Q9UBD9 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.42■□□□□ 0.86
CLCF1Q9UBD9 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CLCF1Q9UBD9 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLCF1Q9UBD9 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLCF1Q9UBD9 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.41■□□□□ 0.86
CLCF1Q9UBD9 AL139246.5-201ENST00000606645 996 ntBASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms