Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC19.63■□□□□ 0.73
CHMP1AQ9HD42 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP1AQ9HD42 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP1AQ9HD42 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP1AQ9HD42 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP1AQ9HD42 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP1AQ9HD42 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP1AQ9HD42 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP1AQ9HD42 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CHMP1AQ9HD42 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC19.62■□□□□ 0.73
CHMP1AQ9HD42 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP1AQ9HD42 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP1AQ9HD42 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP1AQ9HD42 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC19.62■□□□□ 0.73
CHMP1AQ9HD42 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP1AQ9HD42 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP1AQ9HD42 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP1AQ9HD42 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP1AQ9HD42 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC19.62■□□□□ 0.73
CHMP1AQ9HD42 GFER-205ENST00000569451 517 ntTSL 5 BASIC19.62■□□□□ 0.73
CHMP1AQ9HD42 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC19.62■□□□□ 0.73
CHMP1AQ9HD42 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP1AQ9HD42 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP1AQ9HD42 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC19.62■□□□□ 0.73
CHMP1AQ9HD42 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC19.62■□□□□ 0.73
CHMP1AQ9HD42 ME2-208ENST00000638937 2471 ntTSL 5 BASIC19.62■□□□□ 0.73
CHMP1AQ9HD42 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CHMP1AQ9HD42 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC19.62■□□□□ 0.73
CHMP1AQ9HD42 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC19.62■□□□□ 0.73
CHMP1AQ9HD42 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP1AQ9HD42 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
CHMP1AQ9HD42 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP1AQ9HD42 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP1AQ9HD42 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP1AQ9HD42 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP1AQ9HD42 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP1AQ9HD42 FOXO3B-201ENST00000395675 1928 ntBASIC19.61■□□□□ 0.73
CHMP1AQ9HD42 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP1AQ9HD42 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC19.61■□□□□ 0.73
CHMP1AQ9HD42 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
CHMP1AQ9HD42 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP1AQ9HD42 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP1AQ9HD42 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP1AQ9HD42 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC19.61■□□□□ 0.73
CHMP1AQ9HD42 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP1AQ9HD42 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CHMP1AQ9HD42 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC19.6■□□□□ 0.73
CHMP1AQ9HD42 GPX1-201ENST00000419349 1106 ntBASIC19.6■□□□□ 0.73
CHMP1AQ9HD42 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC19.6■□□□□ 0.73
CHMP1AQ9HD42 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP1AQ9HD42 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP1AQ9HD42 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP1AQ9HD42 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
CHMP1AQ9HD42 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP1AQ9HD42 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
CHMP1AQ9HD42 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
CHMP1AQ9HD42 AC004812.2-201ENST00000611079 2094 ntBASIC19.59■□□□□ 0.73
CHMP1AQ9HD42 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP1AQ9HD42 HLA-L-211ENST00000482052 1765 ntBASIC19.59■□□□□ 0.73
CHMP1AQ9HD42 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
CHMP1AQ9HD42 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC19.59■□□□□ 0.73
CHMP1AQ9HD42 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP1AQ9HD42 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC19.58■□□□□ 0.73
CHMP1AQ9HD42 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC19.58■□□□□ 0.73
CHMP1AQ9HD42 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CHMP1AQ9HD42 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.58■□□□□ 0.73
CHMP1AQ9HD42 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CHMP1AQ9HD42 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
CHMP1AQ9HD42 RAP2CP1-202ENST00000605179 643 ntBASIC19.58■□□□□ 0.72
CHMP1AQ9HD42 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
CHMP1AQ9HD42 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CHMP1AQ9HD42 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CHMP1AQ9HD42 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP1AQ9HD42 ABCB10P4-201ENST00000566803 2184 ntBASIC19.57■□□□□ 0.72
CHMP1AQ9HD42 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CHMP1AQ9HD42 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP1AQ9HD42 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP1AQ9HD42 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP1AQ9HD42 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP1AQ9HD42 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP1AQ9HD42 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP1AQ9HD42 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC19.57■□□□□ 0.72
CHMP1AQ9HD42 HES4-204ENST00000484667 667 ntTSL 3 BASIC19.57■□□□□ 0.72
CHMP1AQ9HD42 AC026202.3-201ENST00000600805 1127 ntBASIC19.57■□□□□ 0.72
CHMP1AQ9HD42 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
CHMP1AQ9HD42 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP1AQ9HD42 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CHMP1AQ9HD42 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP1AQ9HD42 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP1AQ9HD42 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP1AQ9HD42 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP1AQ9HD42 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP1AQ9HD42 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP1AQ9HD42 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP1AQ9HD42 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP1AQ9HD42 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP1AQ9HD42 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP1AQ9HD42 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC19.56■□□□□ 0.72
CHMP1AQ9HD42 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.56■□□□□ 0.72
CHMP1AQ9HD42 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms