Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
UBQLN3Q9H347 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21.27■■□□□ 1
UBQLN3Q9H347 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.27■■□□□ 1
UBQLN3Q9H347 KRT125P-201ENST00000546827 989 ntBASIC21.27■■□□□ 1
UBQLN3Q9H347 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.27■■□□□ 1
UBQLN3Q9H347 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
UBQLN3Q9H347 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC21.27■■□□□ 1
UBQLN3Q9H347 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
UBQLN3Q9H347 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.27■■□□□ 1
UBQLN3Q9H347 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC21.27■□□□□ 0.99
UBQLN3Q9H347 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
UBQLN3Q9H347 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.27■□□□□ 0.99
UBQLN3Q9H347 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
UBQLN3Q9H347 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
UBQLN3Q9H347 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21.26■□□□□ 0.99
UBQLN3Q9H347 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
UBQLN3Q9H347 MIR4787-201ENST00000607364 84 ntBASIC21.26■□□□□ 0.99
UBQLN3Q9H347 MIR6089-201ENST00000616698 64 ntBASIC21.26■□□□□ 0.99
UBQLN3Q9H347 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
UBQLN3Q9H347 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
UBQLN3Q9H347 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.26■□□□□ 0.99
UBQLN3Q9H347 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
UBQLN3Q9H347 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UBQLN3Q9H347 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC21.25■□□□□ 0.99
UBQLN3Q9H347 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
UBQLN3Q9H347 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.25■□□□□ 0.99
UBQLN3Q9H347 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.25■□□□□ 0.99
UBQLN3Q9H347 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
UBQLN3Q9H347 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.25■□□□□ 0.99
UBQLN3Q9H347 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.25■□□□□ 0.99
UBQLN3Q9H347 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
UBQLN3Q9H347 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
UBQLN3Q9H347 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBQLN3Q9H347 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
UBQLN3Q9H347 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBQLN3Q9H347 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBQLN3Q9H347 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBQLN3Q9H347 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBQLN3Q9H347 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.24■□□□□ 0.99
UBQLN3Q9H347 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.24■□□□□ 0.99
UBQLN3Q9H347 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UBQLN3Q9H347 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
UBQLN3Q9H347 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
UBQLN3Q9H347 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
UBQLN3Q9H347 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
UBQLN3Q9H347 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
UBQLN3Q9H347 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
UBQLN3Q9H347 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.23■□□□□ 0.99
UBQLN3Q9H347 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
UBQLN3Q9H347 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
UBQLN3Q9H347 AF131216.4-201ENST00000638924 1588 ntBASIC21.23■□□□□ 0.99
UBQLN3Q9H347 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
UBQLN3Q9H347 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
UBQLN3Q9H347 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
UBQLN3Q9H347 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
UBQLN3Q9H347 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
UBQLN3Q9H347 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
UBQLN3Q9H347 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.21■□□□□ 0.99
UBQLN3Q9H347 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.21■□□□□ 0.99
UBQLN3Q9H347 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.21■□□□□ 0.99
UBQLN3Q9H347 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.21■□□□□ 0.99
UBQLN3Q9H347 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.21■□□□□ 0.99
UBQLN3Q9H347 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.21■□□□□ 0.99
UBQLN3Q9H347 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.21■□□□□ 0.99
UBQLN3Q9H347 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.21■□□□□ 0.99
UBQLN3Q9H347 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.21■□□□□ 0.99
UBQLN3Q9H347 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.21■□□□□ 0.99
UBQLN3Q9H347 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
UBQLN3Q9H347 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
UBQLN3Q9H347 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
UBQLN3Q9H347 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.2■□□□□ 0.99
UBQLN3Q9H347 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
UBQLN3Q9H347 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
UBQLN3Q9H347 AC004812.2-201ENST00000611079 2094 ntBASIC21.2■□□□□ 0.98
UBQLN3Q9H347 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
UBQLN3Q9H347 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBQLN3Q9H347 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.19■□□□□ 0.98
UBQLN3Q9H347 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC21.19■□□□□ 0.98
UBQLN3Q9H347 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
UBQLN3Q9H347 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.19■□□□□ 0.98
UBQLN3Q9H347 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.19■□□□□ 0.98
UBQLN3Q9H347 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.19■□□□□ 0.98
UBQLN3Q9H347 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
UBQLN3Q9H347 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
UBQLN3Q9H347 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
UBQLN3Q9H347 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
UBQLN3Q9H347 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC21.18■□□□□ 0.98
UBQLN3Q9H347 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBQLN3Q9H347 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.18■□□□□ 0.98
UBQLN3Q9H347 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
UBQLN3Q9H347 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
UBQLN3Q9H347 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBQLN3Q9H347 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
UBQLN3Q9H347 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
UBQLN3Q9H347 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.17■□□□□ 0.98
UBQLN3Q9H347 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.17■□□□□ 0.98
UBQLN3Q9H347 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.17■□□□□ 0.98
UBQLN3Q9H347 AL356441.2-201ENST00000443009 864 ntBASIC21.17■□□□□ 0.98
UBQLN3Q9H347 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
UBQLN3Q9H347 AC092028.1-203ENST00000608262 953 ntBASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms