Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 SSSCA1-AS1-201ENST00000567594 614 ntBASIC23.98■■□□□ 1.43
TTC28Q96AY4 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
TTC28Q96AY4 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC23.97■■□□□ 1.43
TTC28Q96AY4 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC23.96■■□□□ 1.43
TTC28Q96AY4 SNX3-202ENST00000349379 890 ntTSL 2 BASIC23.96■■□□□ 1.43
TTC28Q96AY4 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
TTC28Q96AY4 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
TTC28Q96AY4 TSPY26P-201ENST00000476365 1326 ntBASIC23.96■■□□□ 1.43
TTC28Q96AY4 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
TTC28Q96AY4 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
TTC28Q96AY4 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC23.95■■□□□ 1.42
TTC28Q96AY4 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
TTC28Q96AY4 AC016769.1-201ENST00000409132 1010 ntBASIC23.95■■□□□ 1.42
TTC28Q96AY4 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
TTC28Q96AY4 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC23.95■■□□□ 1.42
TTC28Q96AY4 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC23.95■■□□□ 1.42
TTC28Q96AY4 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC23.94■■□□□ 1.42
TTC28Q96AY4 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
TTC28Q96AY4 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC23.94■■□□□ 1.42
TTC28Q96AY4 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
TTC28Q96AY4 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
TTC28Q96AY4 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC23.94■■□□□ 1.42
TTC28Q96AY4 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC23.94■■□□□ 1.42
TTC28Q96AY4 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC23.94■■□□□ 1.42
TTC28Q96AY4 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC23.93■■□□□ 1.42
TTC28Q96AY4 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
TTC28Q96AY4 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC23.93■■□□□ 1.42
TTC28Q96AY4 HES6-206ENST00000409574 738 ntTSL 2 BASIC23.93■■□□□ 1.42
TTC28Q96AY4 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
TTC28Q96AY4 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
TTC28Q96AY4 KLF13-207ENST00000560473 489 ntTSL 3 BASIC23.93■■□□□ 1.42
TTC28Q96AY4 AC009102.2-201ENST00000606772 1639 ntBASIC23.92■■□□□ 1.42
TTC28Q96AY4 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC23.92■■□□□ 1.42
TTC28Q96AY4 AC006455.2-201ENST00000429931 906 ntBASIC23.92■■□□□ 1.42
TTC28Q96AY4 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC23.92■■□□□ 1.42
TTC28Q96AY4 MIR6084-201ENST00000622012 110 ntBASIC23.92■■□□□ 1.42
TTC28Q96AY4 AC087239.1-201ENST00000622671 572 ntBASIC23.92■■□□□ 1.42
TTC28Q96AY4 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
TTC28Q96AY4 REST-206ENST00000612429 1376 ntTSL 5 BASIC23.92■■□□□ 1.42
TTC28Q96AY4 REST-207ENST00000616975 1370 ntTSL 5 BASIC23.92■■□□□ 1.42
TTC28Q96AY4 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC23.92■■□□□ 1.42
TTC28Q96AY4 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC23.92■■□□□ 1.42
TTC28Q96AY4 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
TTC28Q96AY4 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
TTC28Q96AY4 C17orf82-201ENST00000623772 1530 ntBASIC23.92■■□□□ 1.42
TTC28Q96AY4 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
TTC28Q96AY4 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
TTC28Q96AY4 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC23.91■■□□□ 1.42
TTC28Q96AY4 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC23.91■■□□□ 1.42
TTC28Q96AY4 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC23.91■■□□□ 1.42
TTC28Q96AY4 AC012414.1-201ENST00000556676 535 ntBASIC23.91■■□□□ 1.42
TTC28Q96AY4 AL449106.1-201ENST00000608517 1980 ntBASIC23.9■■□□□ 1.42
TTC28Q96AY4 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
TTC28Q96AY4 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
TTC28Q96AY4 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC23.9■■□□□ 1.42
TTC28Q96AY4 STX7-201ENST00000367937 1090 ntTSL 5 BASIC23.9■■□□□ 1.42
TTC28Q96AY4 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
TTC28Q96AY4 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
TTC28Q96AY4 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC23.9■■□□□ 1.42
TTC28Q96AY4 MIR663A-201ENST00000385250 93 ntBASIC23.9■■□□□ 1.42
TTC28Q96AY4 GPX1P1-201ENST00000388829 606 ntBASIC23.9■■□□□ 1.42
TTC28Q96AY4 APTR-205ENST00000447009 902 ntTSL 2 BASIC23.9■■□□□ 1.42
TTC28Q96AY4 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC23.9■■□□□ 1.42
TTC28Q96AY4 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC23.9■■□□□ 1.42
TTC28Q96AY4 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
TTC28Q96AY4 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC23.9■■□□□ 1.42
TTC28Q96AY4 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC23.89■■□□□ 1.42
TTC28Q96AY4 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC23.89■■□□□ 1.42
TTC28Q96AY4 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC23.89■■□□□ 1.42
TTC28Q96AY4 AC137761.2-201ENST00000561729 223 ntBASIC23.89■■□□□ 1.42
TTC28Q96AY4 AC145350.3-201ENST00000569033 163 ntBASIC23.89■■□□□ 1.42
TTC28Q96AY4 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC23.89■■□□□ 1.42
TTC28Q96AY4 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
TTC28Q96AY4 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
TTC28Q96AY4 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC23.89■■□□□ 1.41
TTC28Q96AY4 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC23.89■■□□□ 1.41
TTC28Q96AY4 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC23.89■■□□□ 1.41
TTC28Q96AY4 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC23.88■■□□□ 1.41
TTC28Q96AY4 MIR572-201ENST00000384983 95 ntBASIC23.88■■□□□ 1.41
TTC28Q96AY4 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
TTC28Q96AY4 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC23.88■■□□□ 1.41
TTC28Q96AY4 AC245100.8-202ENST00000629247 1058 ntBASIC23.88■■□□□ 1.41
TTC28Q96AY4 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
TTC28Q96AY4 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC23.88■■□□□ 1.41
TTC28Q96AY4 KRT18P6-201ENST00000555540 1265 ntBASIC23.88■■□□□ 1.41
TTC28Q96AY4 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
TTC28Q96AY4 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
TTC28Q96AY4 PRORSD1P-201ENST00000295112 541 ntBASIC23.87■■□□□ 1.41
TTC28Q96AY4 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC23.87■■□□□ 1.41
TTC28Q96AY4 MIR3181-201ENST00000578512 73 ntBASIC23.87■■□□□ 1.41
TTC28Q96AY4 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC23.87■■□□□ 1.41
TTC28Q96AY4 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
TTC28Q96AY4 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
TTC28Q96AY4 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
TTC28Q96AY4 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC23.86■■□□□ 1.41
TTC28Q96AY4 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC23.86■■□□□ 1.41
TTC28Q96AY4 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
TTC28Q96AY4 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC23.86■■□□□ 1.41
TTC28Q96AY4 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
TTC28Q96AY4 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 122.6 ms