Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
RTF1Q92541 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC30.16■■■□□ 2.42
RTF1Q92541 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC30.16■■■□□ 2.42
RTF1Q92541 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
RTF1Q92541 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC30.16■■■□□ 2.42
RTF1Q92541 REST-206ENST00000612429 1376 ntTSL 5 BASIC30.15■■■□□ 2.42
RTF1Q92541 REST-207ENST00000616975 1370 ntTSL 5 BASIC30.15■■■□□ 2.42
RTF1Q92541 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
RTF1Q92541 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
RTF1Q92541 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
RTF1Q92541 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC30.15■■■□□ 2.42
RTF1Q92541 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
RTF1Q92541 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
RTF1Q92541 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
RTF1Q92541 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
RTF1Q92541 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC30.14■■■□□ 2.42
RTF1Q92541 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
RTF1Q92541 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC30.14■■■□□ 2.42
RTF1Q92541 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC30.14■■■□□ 2.42
RTF1Q92541 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC30.14■■■□□ 2.42
RTF1Q92541 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC30.13■■■□□ 2.41
RTF1Q92541 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
RTF1Q92541 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC30.13■■■□□ 2.41
RTF1Q92541 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC30.13■■■□□ 2.41
RTF1Q92541 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC30.13■■■□□ 2.41
RTF1Q92541 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC30.13■■■□□ 2.41
RTF1Q92541 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
RTF1Q92541 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
RTF1Q92541 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
RTF1Q92541 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
RTF1Q92541 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC30.12■■■□□ 2.41
RTF1Q92541 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC30.12■■■□□ 2.41
RTF1Q92541 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
RTF1Q92541 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC30.12■■■□□ 2.41
RTF1Q92541 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC30.11■■■□□ 2.41
RTF1Q92541 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
RTF1Q92541 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
RTF1Q92541 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC30.11■■■□□ 2.41
RTF1Q92541 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC30.11■■■□□ 2.41
RTF1Q92541 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
RTF1Q92541 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC30.1■■■□□ 2.41
RTF1Q92541 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
RTF1Q92541 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
RTF1Q92541 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
RTF1Q92541 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC30.1■■■□□ 2.41
RTF1Q92541 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
RTF1Q92541 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
RTF1Q92541 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
RTF1Q92541 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
RTF1Q92541 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC30.08■■■□□ 2.41
RTF1Q92541 AP003733.4-201ENST00000623785 1697 ntBASIC30.08■■■□□ 2.41
RTF1Q92541 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
RTF1Q92541 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC30.08■■■□□ 2.41
RTF1Q92541 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
RTF1Q92541 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
RTF1Q92541 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC30.08■■■□□ 2.41
RTF1Q92541 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC30.08■■■□□ 2.41
RTF1Q92541 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC30.08■■■□□ 2.41
RTF1Q92541 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC30.08■■■□□ 2.41
RTF1Q92541 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC30.08■■■□□ 2.41
RTF1Q92541 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
RTF1Q92541 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC30.07■■■□□ 2.4
RTF1Q92541 NALT1-201ENST00000429224 738 ntTSL 5 BASIC30.07■■■□□ 2.4
RTF1Q92541 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC30.07■■■□□ 2.4
RTF1Q92541 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC30.07■■■□□ 2.4
RTF1Q92541 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC30.06■■■□□ 2.4
RTF1Q92541 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC30.06■■■□□ 2.4
RTF1Q92541 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC30.06■■■□□ 2.4
RTF1Q92541 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC30.06■■■□□ 2.4
RTF1Q92541 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC30.06■■■□□ 2.4
RTF1Q92541 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC30.06■■■□□ 2.4
RTF1Q92541 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC30.06■■■□□ 2.4
RTF1Q92541 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC30.06■■■□□ 2.4
RTF1Q92541 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
RTF1Q92541 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
RTF1Q92541 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC30.05■■■□□ 2.4
RTF1Q92541 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
RTF1Q92541 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC30.05■■■□□ 2.4
RTF1Q92541 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC30.05■■■□□ 2.4
RTF1Q92541 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
RTF1Q92541 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC30.05■■■□□ 2.4
RTF1Q92541 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC30.04■■■□□ 2.4
RTF1Q92541 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC30.04■■■□□ 2.4
RTF1Q92541 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
RTF1Q92541 AL139246.5-201ENST00000606645 996 ntBASIC30.04■■■□□ 2.4
RTF1Q92541 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
RTF1Q92541 AL161729.1-201ENST00000604104 1402 ntBASIC30.04■■■□□ 2.4
RTF1Q92541 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC30.04■■■□□ 2.4
RTF1Q92541 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
RTF1Q92541 CD37-213ENST00000598095 1598 ntTSL 2 BASIC30.03■■■□□ 2.4
RTF1Q92541 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
RTF1Q92541 AC019069.1-201ENST00000610008 1333 ntBASIC30.03■■■□□ 2.4
RTF1Q92541 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
RTF1Q92541 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC30.02■■■□□ 2.4
RTF1Q92541 RALB-208ENST00000631312 311 ntTSL 5 BASIC30.02■■■□□ 2.4
RTF1Q92541 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC30.02■■■□□ 2.4
RTF1Q92541 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
RTF1Q92541 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC30.02■■■□□ 2.4
RTF1Q92541 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC30.02■■■□□ 2.4
RTF1Q92541 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC30.02■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms