Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
HMGB4Q8WW32 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
HMGB4Q8WW32 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
HMGB4Q8WW32 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
HMGB4Q8WW32 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
HMGB4Q8WW32 AC092171.4-201ENST00000609130 632 ntBASIC23.18■■□□□ 1.3
HMGB4Q8WW32 SF1-220ENST00000626028 704 ntTSL 2 BASIC23.18■■□□□ 1.3
HMGB4Q8WW32 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC23.18■■□□□ 1.3
HMGB4Q8WW32 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
HMGB4Q8WW32 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC23.18■■□□□ 1.3
HMGB4Q8WW32 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
HMGB4Q8WW32 AL121749.1-202ENST00000609313 2153 ntBASIC23.17■■□□□ 1.3
HMGB4Q8WW32 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
HMGB4Q8WW32 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC23.17■■□□□ 1.3
HMGB4Q8WW32 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC23.17■■□□□ 1.3
HMGB4Q8WW32 STK32C-205ENST00000456004 607 ntTSL 2 BASIC23.17■■□□□ 1.3
HMGB4Q8WW32 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC23.17■■□□□ 1.3
HMGB4Q8WW32 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HMGB4Q8WW32 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
HMGB4Q8WW32 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC23.16■■□□□ 1.3
HMGB4Q8WW32 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
HMGB4Q8WW32 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
HMGB4Q8WW32 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.16■■□□□ 1.3
HMGB4Q8WW32 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HMGB4Q8WW32 MIR939-201ENST00000401314 82 ntBASIC23.16■■□□□ 1.3
HMGB4Q8WW32 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HMGB4Q8WW32 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
HMGB4Q8WW32 AP001330.3-201ENST00000520123 633 ntBASIC23.16■■□□□ 1.3
HMGB4Q8WW32 MIR4767-201ENST00000582827 78 ntBASIC23.16■■□□□ 1.3
HMGB4Q8WW32 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HMGB4Q8WW32 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
HMGB4Q8WW32 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
HMGB4Q8WW32 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HMGB4Q8WW32 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
HMGB4Q8WW32 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
HMGB4Q8WW32 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
HMGB4Q8WW32 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
HMGB4Q8WW32 SLC6A10P-202ENST00000431994 2058 ntBASIC23.15■■□□□ 1.3
HMGB4Q8WW32 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
HMGB4Q8WW32 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
HMGB4Q8WW32 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC23.15■■□□□ 1.3
HMGB4Q8WW32 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
HMGB4Q8WW32 STOX2-205ENST00000513034 807 ntTSL 3 BASIC23.15■■□□□ 1.3
HMGB4Q8WW32 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
HMGB4Q8WW32 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC23.15■■□□□ 1.3
HMGB4Q8WW32 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
HMGB4Q8WW32 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
HMGB4Q8WW32 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
HMGB4Q8WW32 PTMA-205ENST00000410064 814 ntTSL 2 BASIC23.14■■□□□ 1.29
HMGB4Q8WW32 AC099791.2-201ENST00000605725 427 ntBASIC23.14■■□□□ 1.29
HMGB4Q8WW32 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
HMGB4Q8WW32 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC23.14■■□□□ 1.29
HMGB4Q8WW32 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
HMGB4Q8WW32 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
HMGB4Q8WW32 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC23.13■■□□□ 1.29
HMGB4Q8WW32 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
HMGB4Q8WW32 MIR5787-201ENST00000611784 55 ntBASIC23.13■■□□□ 1.29
HMGB4Q8WW32 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
HMGB4Q8WW32 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
HMGB4Q8WW32 SERBP1P1-201ENST00000396021 1160 ntBASIC23.12■■□□□ 1.29
HMGB4Q8WW32 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC23.12■■□□□ 1.29
HMGB4Q8WW32 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
HMGB4Q8WW32 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC23.12■■□□□ 1.29
HMGB4Q8WW32 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
HMGB4Q8WW32 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
HMGB4Q8WW32 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC23.12■■□□□ 1.29
HMGB4Q8WW32 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
HMGB4Q8WW32 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
HMGB4Q8WW32 AC091305.1-201ENST00000479476 895 ntBASIC23.11■■□□□ 1.29
HMGB4Q8WW32 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
HMGB4Q8WW32 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC23.11■■□□□ 1.29
HMGB4Q8WW32 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC23.11■■□□□ 1.29
HMGB4Q8WW32 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC23.11■■□□□ 1.29
HMGB4Q8WW32 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.11■■□□□ 1.29
HMGB4Q8WW32 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC23.11■■□□□ 1.29
HMGB4Q8WW32 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
HMGB4Q8WW32 PTCHD3P2-201ENST00000424937 1205 ntBASIC23.1■■□□□ 1.29
HMGB4Q8WW32 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
HMGB4Q8WW32 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC23.1■■□□□ 1.29
HMGB4Q8WW32 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC23.1■■□□□ 1.29
HMGB4Q8WW32 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
HMGB4Q8WW32 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
HMGB4Q8WW32 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
HMGB4Q8WW32 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HMGB4Q8WW32 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC23.09■■□□□ 1.29
HMGB4Q8WW32 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC23.09■■□□□ 1.29
HMGB4Q8WW32 MAG-206ENST00000597035 542 ntTSL 4 BASIC23.09■■□□□ 1.29
HMGB4Q8WW32 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HMGB4Q8WW32 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC23.09■■□□□ 1.29
HMGB4Q8WW32 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
HMGB4Q8WW32 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC23.09■■□□□ 1.29
HMGB4Q8WW32 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC23.08■■□□□ 1.29
HMGB4Q8WW32 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
HMGB4Q8WW32 AL022069.1-201ENST00000568025 1636 ntBASIC23.08■■□□□ 1.29
HMGB4Q8WW32 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
HMGB4Q8WW32 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
HMGB4Q8WW32 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
HMGB4Q8WW32 RBM38-205ENST00000440234 686 ntTSL 2 BASIC23.08■■□□□ 1.29
HMGB4Q8WW32 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
HMGB4Q8WW32 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms