Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
SHROOM3Q8TF72 AL031848.2-201ENST00000607670 837 ntBASIC23.56■■□□□ 1.36
SHROOM3Q8TF72 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC23.56■■□□□ 1.36
SHROOM3Q8TF72 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
SHROOM3Q8TF72 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
SHROOM3Q8TF72 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC23.56■■□□□ 1.36
SHROOM3Q8TF72 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
SHROOM3Q8TF72 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
SHROOM3Q8TF72 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC23.55■■□□□ 1.36
SHROOM3Q8TF72 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
SHROOM3Q8TF72 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
SHROOM3Q8TF72 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
SHROOM3Q8TF72 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
SHROOM3Q8TF72 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
SHROOM3Q8TF72 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC23.54■■□□□ 1.36
SHROOM3Q8TF72 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC23.54■■□□□ 1.36
SHROOM3Q8TF72 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
SHROOM3Q8TF72 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC23.54■■□□□ 1.36
SHROOM3Q8TF72 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
SHROOM3Q8TF72 AC137630.3-201ENST00000607245 391 ntBASIC23.54■■□□□ 1.36
SHROOM3Q8TF72 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
SHROOM3Q8TF72 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
SHROOM3Q8TF72 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
SHROOM3Q8TF72 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
SHROOM3Q8TF72 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC23.53■■□□□ 1.36
SHROOM3Q8TF72 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
SHROOM3Q8TF72 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC23.53■■□□□ 1.36
SHROOM3Q8TF72 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC23.53■■□□□ 1.36
SHROOM3Q8TF72 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC23.52■■□□□ 1.36
SHROOM3Q8TF72 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
SHROOM3Q8TF72 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC23.52■■□□□ 1.36
SHROOM3Q8TF72 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SHROOM3Q8TF72 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
SHROOM3Q8TF72 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC23.52■■□□□ 1.36
SHROOM3Q8TF72 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SHROOM3Q8TF72 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC23.52■■□□□ 1.36
SHROOM3Q8TF72 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
SHROOM3Q8TF72 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
SHROOM3Q8TF72 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
SHROOM3Q8TF72 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
SHROOM3Q8TF72 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
SHROOM3Q8TF72 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
SHROOM3Q8TF72 RNF146-205ENST00000477776 762 ntTSL 3 BASIC23.51■■□□□ 1.35
SHROOM3Q8TF72 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC23.51■■□□□ 1.35
SHROOM3Q8TF72 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
SHROOM3Q8TF72 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC23.51■■□□□ 1.35
SHROOM3Q8TF72 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
SHROOM3Q8TF72 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
SHROOM3Q8TF72 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
SHROOM3Q8TF72 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
SHROOM3Q8TF72 EI24-204ENST00000527235 1625 ntTSL 5 BASIC23.51■■□□□ 1.35
SHROOM3Q8TF72 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
SHROOM3Q8TF72 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC23.51■■□□□ 1.35
SHROOM3Q8TF72 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
SHROOM3Q8TF72 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
SHROOM3Q8TF72 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
SHROOM3Q8TF72 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
SHROOM3Q8TF72 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC23.5■■□□□ 1.35
SHROOM3Q8TF72 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC23.5■■□□□ 1.35
SHROOM3Q8TF72 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
SHROOM3Q8TF72 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
SHROOM3Q8TF72 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC23.49■■□□□ 1.35
SHROOM3Q8TF72 Z92544.1-202ENST00000571933 1220 ntBASIC23.49■■□□□ 1.35
SHROOM3Q8TF72 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC23.49■■□□□ 1.35
SHROOM3Q8TF72 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC23.49■■□□□ 1.35
SHROOM3Q8TF72 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC23.49■■□□□ 1.35
SHROOM3Q8TF72 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC23.49■■□□□ 1.35
SHROOM3Q8TF72 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
SHROOM3Q8TF72 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
SHROOM3Q8TF72 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
SHROOM3Q8TF72 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
SHROOM3Q8TF72 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
SHROOM3Q8TF72 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
SHROOM3Q8TF72 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC23.47■■□□□ 1.35
SHROOM3Q8TF72 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC23.47■■□□□ 1.35
SHROOM3Q8TF72 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
SHROOM3Q8TF72 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC23.47■■□□□ 1.35
SHROOM3Q8TF72 OR2A1-AS1-204ENST00000470435 602 ntBASIC23.47■■□□□ 1.35
SHROOM3Q8TF72 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC23.47■■□□□ 1.35
SHROOM3Q8TF72 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC23.47■■□□□ 1.35
SHROOM3Q8TF72 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC23.47■■□□□ 1.35
SHROOM3Q8TF72 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
SHROOM3Q8TF72 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
SHROOM3Q8TF72 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC23.46■■□□□ 1.35
SHROOM3Q8TF72 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC23.46■■□□□ 1.35
SHROOM3Q8TF72 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC23.46■■□□□ 1.35
SHROOM3Q8TF72 EI24-213ENST00000618552 1747 ntTSL 5 BASIC23.46■■□□□ 1.35
SHROOM3Q8TF72 AL022069.1-201ENST00000568025 1636 ntBASIC23.46■■□□□ 1.35
SHROOM3Q8TF72 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
SHROOM3Q8TF72 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC23.45■■□□□ 1.35
SHROOM3Q8TF72 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC23.45■■□□□ 1.35
SHROOM3Q8TF72 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
SHROOM3Q8TF72 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC23.45■■□□□ 1.35
SHROOM3Q8TF72 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
SHROOM3Q8TF72 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
SHROOM3Q8TF72 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC23.45■■□□□ 1.34
SHROOM3Q8TF72 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC23.45■■□□□ 1.34
SHROOM3Q8TF72 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
SHROOM3Q8TF72 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC23.44■■□□□ 1.34
SHROOM3Q8TF72 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC23.44■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms