Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
CLHC1Q8NHS4 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
CLHC1Q8NHS4 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
CLHC1Q8NHS4 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
CLHC1Q8NHS4 C9orf163-202ENST00000624034 2573 ntBASIC21.99■■□□□ 1.11
CLHC1Q8NHS4 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.99■■□□□ 1.11
CLHC1Q8NHS4 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CLHC1Q8NHS4 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.99■■□□□ 1.11
CLHC1Q8NHS4 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CLHC1Q8NHS4 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CLHC1Q8NHS4 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CLHC1Q8NHS4 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CLHC1Q8NHS4 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CLHC1Q8NHS4 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CLHC1Q8NHS4 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.99■■□□□ 1.11
CLHC1Q8NHS4 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CLHC1Q8NHS4 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CLHC1Q8NHS4 AC068473.5-201ENST00000616428 2072 ntBASIC21.99■■□□□ 1.11
CLHC1Q8NHS4 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CLHC1Q8NHS4 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC21.98■■□□□ 1.11
CLHC1Q8NHS4 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CLHC1Q8NHS4 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
CLHC1Q8NHS4 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
CLHC1Q8NHS4 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
CLHC1Q8NHS4 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CLHC1Q8NHS4 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CLHC1Q8NHS4 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CLHC1Q8NHS4 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
CLHC1Q8NHS4 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CLHC1Q8NHS4 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
CLHC1Q8NHS4 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
CLHC1Q8NHS4 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.97■■□□□ 1.11
CLHC1Q8NHS4 ABHD17AP5-201ENST00000580133 923 ntBASIC21.97■■□□□ 1.11
CLHC1Q8NHS4 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
CLHC1Q8NHS4 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.97■■□□□ 1.11
CLHC1Q8NHS4 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
CLHC1Q8NHS4 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CLHC1Q8NHS4 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CLHC1Q8NHS4 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC21.96■■□□□ 1.11
CLHC1Q8NHS4 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
CLHC1Q8NHS4 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CLHC1Q8NHS4 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
CLHC1Q8NHS4 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.95■■□□□ 1.1
CLHC1Q8NHS4 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CLHC1Q8NHS4 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.95■■□□□ 1.1
CLHC1Q8NHS4 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
CLHC1Q8NHS4 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CLHC1Q8NHS4 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CLHC1Q8NHS4 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC21.95■■□□□ 1.1
CLHC1Q8NHS4 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CLHC1Q8NHS4 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CLHC1Q8NHS4 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.95■■□□□ 1.1
CLHC1Q8NHS4 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CLHC1Q8NHS4 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
CLHC1Q8NHS4 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CLHC1Q8NHS4 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
CLHC1Q8NHS4 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
CLHC1Q8NHS4 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CLHC1Q8NHS4 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CLHC1Q8NHS4 NTF6A-201ENST00000591175 560 ntBASIC21.94■■□□□ 1.1
CLHC1Q8NHS4 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CLHC1Q8NHS4 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CLHC1Q8NHS4 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CLHC1Q8NHS4 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.94■■□□□ 1.1
CLHC1Q8NHS4 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
CLHC1Q8NHS4 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CLHC1Q8NHS4 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
CLHC1Q8NHS4 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.93■■□□□ 1.1
CLHC1Q8NHS4 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CLHC1Q8NHS4 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CLHC1Q8NHS4 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
CLHC1Q8NHS4 HYI-210ENST00000486909 905 ntTSL 5 BASIC21.93■■□□□ 1.1
CLHC1Q8NHS4 AC139795.1-202ENST00000500444 432 ntBASIC21.93■■□□□ 1.1
CLHC1Q8NHS4 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.93■■□□□ 1.1
CLHC1Q8NHS4 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CLHC1Q8NHS4 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.93■■□□□ 1.1
CLHC1Q8NHS4 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CLHC1Q8NHS4 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CLHC1Q8NHS4 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
CLHC1Q8NHS4 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CLHC1Q8NHS4 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CLHC1Q8NHS4 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CLHC1Q8NHS4 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.92■■□□□ 1.1
CLHC1Q8NHS4 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC21.91■■□□□ 1.1
CLHC1Q8NHS4 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.91■■□□□ 1.1
CLHC1Q8NHS4 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
CLHC1Q8NHS4 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CLHC1Q8NHS4 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CLHC1Q8NHS4 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.91■■□□□ 1.1
CLHC1Q8NHS4 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.91■■□□□ 1.1
CLHC1Q8NHS4 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
CLHC1Q8NHS4 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CLHC1Q8NHS4 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
CLHC1Q8NHS4 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
CLHC1Q8NHS4 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
CLHC1Q8NHS4 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC21.91■■□□□ 1.1
CLHC1Q8NHS4 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CLHC1Q8NHS4 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.91■■□□□ 1.1
CLHC1Q8NHS4 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
CLHC1Q8NHS4 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms